RNA id: AMCG00013817


Basic Information

Item Value
RNA id AMCG00013817
length 273
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00013817
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43618051 ~ 43620709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTATGTTTGTCGGTCTTCAGCCTGCctaacaatcgaaagcaaagctGACCTGATCCAGCCCAGAAAGATAACCAACCCCATCCTGGAGTCCCCGAACCACCAGGACCTCCACAGAGAGCTGCTTCTCAGTCACAGGCGAGGGCTGTTGCCAGAGGAGAAGCCCGAACTCCAGCGTTACGAAAGGGAAGAGATGAAACGCAAAGAAGACCAGGAGAACATTCCCGAGTTTGTCCGGGTGAAGGAGAACCTCCGGCACATCCCTGTGACCGGG

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58532 lncRNA upstream 154045 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 166036 43432376 ~ 43452015 (+) False G46940
TU58520 lncRNA upstream 166036 43444958 ~ 43452015 (+) True G46940
TU58523 lncRNA upstream 174755 43441497 ~ 43443296 (+) True G46941
TU58474 lncRNA upstream 265636 43350853 ~ 43352415 (+) True G46905
TU58645 lncRNA downstream 80215 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA downstream 80215 43700924 ~ 43704266 (+) True G47032
TU58655 lncRNA downstream 298960 43919669 ~ 43919967 (+) True G47040
TU58703 lncRNA downstream 601699 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 668348 44289057 ~ 44291796 (+) True G47106
AMCG00013815 mRNA upstream 10489 43594441 ~ 43607562 (+) True AMCG00013815
AMCG00013812 mRNA upstream 103594 43490786 ~ 43514457 (+) True AMCG00013812
AMCG00013811 mRNA upstream 130823 43470457 ~ 43487228 (+) True AMCG00013811
AMCG00013807 mRNA upstream 186713 43425955 ~ 43431338 (+) True AMCG00013807
AMCG00013803 mRNA upstream 336047 43279131 ~ 43282004 (+) True AMCG00013803
AMCG00013821 mRNA downstream 9759 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013816 mRNA downstream 36518 43657227 ~ 43668484 (+) True AMCG00013816
AMCG00013818 mRNA downstream 51524 43672233 ~ 43675241 (+) True AMCG00013818
AMCG00013824 mRNA downstream 66643 43687352 ~ 43696325 (+) True AMCG00013824
AMCG00013826 mRNA downstream 483462 44104171 ~ 44123031 (+) True AMCG00013826
TU58527 other upstream 177353 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 528408 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 573615 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 969297 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1176806 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 1414063 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1705949 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2195663 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2313950 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 3448992 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile