RNA id: AMCG00013824


Basic Information

Item Value
RNA id AMCG00013824
length 2529
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00013824
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43687352 ~ 43696325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGTCTTCTGAGGCCATGGACGGGACTCGCCTGTCTGGGTATGGAGGCGTCCCTAACCTGGGACTCACCCTGGACGAGGAATGTCCTATAGAGGCAGGGATGGAGGATATTGGTGATGCCGTTGATCACACAGAGGGTTGTGCAGAGGCCAAGCGCCAGAGAAGCAGGGGATCAGCTCTCTCCTTCACTGGGCTGGGGGTGGACATCTGCAAGAGGCAGATTTTGACAGATGTCTCAGGGACTGTTCTACCGGGAGAACTTATGGCGATTATGGGACCAAATGGCTCTGGAAAGACCACTCTCATAAGGGCTCTCAGTGGCCGACTGCAAGCCAAGTCTGGACAGATCTCACTGGACGGACAAGTCGTGTCTCAAACCCACATGAGAAGAGTTTTATACGTGATGCAGCAGGATGAGTTTTTCCCATCGCTGACTGCACAGCTTCGGCTGCTGGATTCCATCAATGCGGTGCAGAGGAGAGAAATGATTGTCGAATTGGCAACAGACTTGCGTATCCAGCACTGTCTCCACACTAGTGACGGCCTGTCGcatggagagagaaagcgaCTGCACCTCGCCTGTGGACTCCTGTCTGACCCTGCTGTGCTGCTCCTGGACGAACCGACTACCGGGTTGGACTCGGGTGCAGCTCACGGGCTCTTCTCCACTCTGCAGCACTACGCCAAGGAATACGAGAAAACCATCCTGTGCTCGATCCATAACCCCTCCCCACAGATCCTCAGCACTGTCGACAAACTGCTCCTTTTATCACGTGGAGAGGTGAGCCACCGCTGGCGCCGTCTCACCAGCATCCCACCGAGGTCTGCACTGTCGAACGCCAGTGGCCGCGTTGTCTACTGTGGAGAGGTCTGCAGACTTTCAAGCTTTCTGGAAGATCTGGGAATGCCCTGTTCCTCACACTACAGCCCAGCAGACTACCTGTTGGACAAGCTGGAGGAGTTGCCTCAAGTCAGGCAGATCACGGTGACCTACAGTAAGAAGCTGCGTGCCAGCACTGAGAAGCAGTCTGGAAATGCAGGTCCACAGAGCCACACAGGCCACGCTGAGCAGGAGCAGAGTGGGATGGACGGGCCCTCTGCTTTCCGGATCCGGTTCTGTGCGCTGGCGCTGCGAAACTACAAGCTGAAGAAGGGCCTGTTTCCGCTCAGCGTGGTCAACACCTCCATTCTTGCAGTCCTGATAGGGGCCATATGGTTCCAGATCCCGAAGGAGGAAGAGCACATTAAGACGCATGTTTCAGCGGTCTTTGTCCTAATTCTGTACTGGTTCCTTGCCCCAGTCTCCTCTGCAGCAGTGAGTATCATCAGAGAATACCCCGTCGTCAAGCAGGAGCTGCTGGCCGACTTATACCCCCTGCCTGCCTACTTCCTGGCCAAGGAGCTGACGGAGCTGGGCCTCCTCTTGCCCTTCGTGGTCTGCCACTTCTCCGTCGCCTTCTGCATGGCTGGACTCTACGTGCCGCTCGTGTACATCACCCGCATGGCCGTCGTGGTCATGTGTGCCTTCGCCGCTCAGAACCGACATGAACCCGGTCAAGGCCTCCTCGTCCCGTGGGTCCTGTTTCACGGTGGCCAGCAGGCCGCTCGAGTCCGGGTCCGCCGCGTGGAGCAGCTCGGCCAGGACCAGAGTGCCAGAGCTGCGGCTGTACAGGTAGGCCTTCCAGGGGTCGGCGCCGGGCCGAGTGAAAGCCAGGGCCTGGATTTTGACGAGCTGCAGGGCCGCCTGCAGGACCTCTGGAGAGGGGCTGGGTCCCGGCCAGTCCAGGGTCTCCGCACAGGACAGCTCCAGGTTCAGCCAGTGCTTCTCAAAGAGCTCTGGGGACAAGGCTGGCCCCGCGGCGAGGCTGAAGTCTCCTCCCCCGCCGTCAGGGCACGCTGCCGGCTCATTGCAGGTCCCCACCACTGCCAAGAGGAAGAGTTCGACCTCAGATCCCTCTTTGTCCTGGCGCCCAGCAAGACTTGCcctctcttccctgtctgtatTACTCAGCCTCCACGTTCACCCACCTGCTTGCGGGGCCTCCTCGGGGCCCCGGGGGATGTGCTTGGGACTGCCCCTAGTGGCGAGGATGGCAGCCCAGCGCTCCCGGCCATAGATGGGCACCAGGGTGTTGAAGTCCGGGGCCCAGCTGTTGACCGGCTCCTCGGGCCTGCCGGTGATTACCCCCAGGGAGGGGTCAGATGTCGGGGCCCCCAGGACCCGCCTGGTCTCCTCCACCCCACAGTGCAGCAGGCGGTAGCACAGCAGAGCGCGGTCTCGCACGGCCATGCTACCTATGCAGTAGTGCAGCAGCCGCCCCAGCATGTCCTGCGTCTCGGCGGGGCGGGACAGGAAGAGGCGCAGCGTGGCCGTGAGCAGCTCCAGCTTGACAGCGGACGACAGCTCGGTTTTCAGGCTGTCGATGTAGTCCTCCAACACGTAGGGGGCGCTGGAGATGTGCTCCCCATGGACGCCCAGCAGCCAGATCAGAGCCTGCTTCCCCTGCAGAGGAGACTTCATCATTAG

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58532 lncRNA upstream 223346 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 235337 43432376 ~ 43452015 (+) False G46940
TU58520 lncRNA upstream 235337 43444958 ~ 43452015 (+) True G46940
TU58523 lncRNA upstream 244056 43441497 ~ 43443296 (+) True G46941
TU58474 lncRNA upstream 334937 43350853 ~ 43352415 (+) True G46905
TU58645 lncRNA downstream 4599 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA downstream 4599 43700924 ~ 43704266 (+) True G47032
TU58655 lncRNA downstream 223344 43919669 ~ 43919967 (+) True G47040
TU58703 lncRNA downstream 526083 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 592732 44289057 ~ 44291796 (+) True G47106
AMCG00013818 mRNA upstream 12111 43672233 ~ 43675241 (+) True AMCG00013818
AMCG00013816 mRNA upstream 18868 43657227 ~ 43668484 (+) True AMCG00013816
AMCG00013821 mRNA upstream 55754 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013817 mRNA upstream 66643 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013815 mRNA upstream 79790 43594441 ~ 43607562 (+) True AMCG00013815
AMCG00013826 mRNA downstream 407846 44104171 ~ 44123031 (+) True AMCG00013826
AMCG00013827 mRNA downstream 449146 44145471 ~ 44150277 (+) True AMCG00013827
AMCG00013829 mRNA downstream 507089 44203414 ~ 44221190 (+) True AMCG00013829
AMCG00013833 mRNA downstream 833393 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013834 mRNA downstream 939154 44635479 ~ 44661638 (+) True AMCG00013834
TU58527 other upstream 246654 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 597709 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 642916 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 1038598 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1246107 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 1338447 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1630333 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 2120047 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 2238334 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 3373376 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile