RNA id: AMCG00013826


Basic Information

Item Value
RNA id AMCG00013826
length 4577
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00013826
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44104171 ~ 44123031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACGCTGATCCGCAATAACCGTCCGACTGCGGGACCTGCGCCTCGGATACAATGAAGCGGTCGCTGCACTTTGAAACGCCTGCCTTGCAAAAGTCTTGAGTGACACGCACCGGACTTGCAGAGgaattaaagagagagagagagagagagagagagagagagagagagagagagagagaggaaaggaaagcCCGGCCTGTCACACGTCACAGGGGGTCAGGAGCGCCGCGGCTTCCTGCATCGCTCTCCCCGGGTAATGAATCATTGATGTCCGGCTCCATGTAGCCTGTCTGCCCCAGTGGCGTCCGCTCGGTCCGTGCCACAGCATGATCAGCCGGGTGAAGAGCGCCGTGTCCAGCCTGGTGGGGGGCATGATGCCGCAcggccaccaccaccacccccccggGCCCACGGGCCCCCAGAGCCCGGACGTGCTGCCCTCTCGCTTCGCCTACTCCCGACCCGACTTTCTGGACCTGACGGCCGAACTGCAGCAGCGCGCCGGCGACCACGCCAGCCGACCCGTCCTCACGCCGAGCCGGGAGCGCCGGCTGCCCTGGGGCTCGGGCTACGCGGAAGTCATCAACGCTGGGAAGAGCATGCTGAACGAGGACCAGGCCTGCTGTGAGGTGCTTTTCCTGAGGAAGAGCGGGGGCAAGCAGTGCGGCTCCACGTCAAAGGAGGAGGAGACGCAGCCGGGGGACAGCACGGGCATCCCCCTCCACTTCTGGGCTCTGTACGATGGCCACGCGGGGGCCGGCGCCGCCGTAATGGCGTCCAAGCTGCTCCACCGCCTGATCAGAGACCGCCTGAAGGAGATCCTGCACCTCCTGGAGGACCCCGCCACGCCGCCGCCCATCTGCCTGGGGAAGAACGGCAGCCCGCCCCGCGCAGAGCTGAAGAGGGCGCCATCGCAGGAGGAGGACGCGGAGACGCCCAGTGACATGACCCTGCGCTTCCACCTGGAGAAGGCGGTCAGTCTGGAGGGGCTGGTCGTGGGGACCATCGAGACCGCCTTCAAGCTGATGGATGACCAGATTGAAAGGGAAAAGGCATCGTTCAACATTTCCGGGGGCTGCTGTGCGCTGGCCATCATCCACCTAATGGGAAAGCTAGCCATTATCATCCGCAATGATGAAGTCATCCCCATGTCCAATGAATTCACCCCCGAGACCGAGAGACAGCGACTGCAGTATCTCGGTGTCCTGAAACCGGAGCTCCTGGGGAATGAGTTCACGCCCGTGGAGTTTCCCCGACGGATTCAGCACAAGGAGCTGGGGAAGAAGATGCTCTTCAGGGATCACACCATGACCGGCTGGGCTTACAAGACCATCCAGGAGGAAGACCTGAAGTTCCCCTTGATATACGGAGAAGgcaaaaaaGCGCGGGTGATGGCAACGATAGGGGTGACTCGGGGACTGGGAGACCACGACCTGAAGGTTTACAGCTCCAACATCCACATCAAGCCCTTCCTGTCCTGCTGCCCCGAGGTCAAGGTGTACGACCTCTCGGAGAGCGAGCACGGGCCGGACGAcgtcctggtcctggggactgACGGACTGTGGGACGTCACCACTGACCTGGAAGTAGCGGACGCAGTCACGGGCTTCCTGTCGCACAGAGAGCCCAGCGATCCCATGAGGTACACGCTGGCGGCGCAGGACCTGGTGCTGAGGTCGCGGGGGGTGCTGAAAGAGCGTGGCTGGCGGCTGCCCAACGACAAGCTGGGCTCCGGAGACGACATCTCGGTGTTCGTGATCCCCCTGGCCGGCCACGCCTCCGCCACATGACAGCACAGACCCGCGGCGGCGGCTTCGGCGAAAGCATCCGTTTAGGAACCGAGGGTCGCCAGTGACGGGTGACCCCAGCCATTCTCTTAGAGACGTCTCAGGTGGCCAATCCTCTCTTGCCTTTTCGGGTTAGAACCAAATTACAGCTCCTCATTGCGTTAGAAGACAAAATTAAGcgtaaattaaaatatttgtcgTTAATGTGACCGAGCTCATTCCtggttctttattttctgtccaaTTATATTTTAGTGTCCCTGTTGTGCGTGATTCCCCATTTTTTTGAATGCTGGGTTTTTGTCCCTTTACCTTCTCCAGCAAAAGTAGCCGCTAATCGCCTCTCTCCATTTCCCCAGTAGTagaaacaaattagtttcaCTCGCTGCCCTGGCACTCGCTGGCGATGCATCACACAACGAAGCCGGTTGTCCCCTTTCTGTCTGATACCAGAGCGACAGATTCAGGAGGGTCGGGGCATCACGGATCTGTTTTATGTCTCCTGGAGAGTAAATAACCGCCTGGCACACATTAAGCTACGCGGCTAAGATTTAACACtcatataaaatgttaatcACACTGCTCAAAGTGCACAGGAAAGGTGTGCACCCATGACTCCAGCTTTATGGCAGACCCAATCTGTCTGTCAAAGAGATGAGAGAAAACGTATCTTCCCCCCAAAGTGGCGCACAGTTTCCcagcattttttccatttcaacacTGAGCTGTGTTATAGTAATACGTGCGTAACGCTAAAATACTTCCCCGTCGCGTTTCCTCACCAGTAGTAATTGTGTGCTGGAATCGTGGATAGGGTTTCCGTGAAGTGGAAATTGCAACAGATGAACTCAGACAGGTACGCAACAGGAGACAAAATGGCGGGGAATCTCAGATTATAATAGAGACTTCATTCAGGTTCCCACTCGGGGCTTTTGACGTGCAATAGCTGTGACGCGGCTCTCGCTTTTAAACAGGTACGAAAATCAAACACTGTGCGGATGACCCTTCAACTTCATCCTCTGTTCTCTCCAGTAGTGCTAGTACAGAAGTTTCccattagggttagggtttacTATAGTTCTTAAGTAGCATAATCACAGGGATCTAAGCCAAgaaatttaacagtatttaACAGTGTTTACTAGTCGATCAGACGTATTGATTAAGCAGTGCTGGTCGACATGCAGTTAGGGTGGTCTGTTTAACCCGTCCATCCGTGTCTCTAGTCCTAGTTCGGTTTTccgatttgttttcctgtcctGTGCTCAAGGGACACTTCACACCAGTAGAAAGAGGTAGGCTCTCTTTATTCTACCTAAAGGACGCGTTGTGCTCGTGTGTCATCCTCACAGCGGGCAATGACAGCGCAGAACACGCCGCTCCAGAAAGAGATCGAAATATCCCACAATGCCGTGCATGATAGATTTAGCTGCCTTCGTATGCTTGGCTTGGAGGGGGAAAGAGGGCACGGACCATCTCAGATCTCTGGATTAAGCCTTTTACTACGAGGGTTGGATCTGCAAACGTAGGTCTGGACCAGGGGTGTGCAAAGCTGGAGAGCCACAGTCTTGTTAGTTCTTTAAATAAACGAGTgcttataaaacaaatctacttACATAACGCCAAGCTTCGCTAGGATGGAAACGCGGCGACTGTCTCTCCAGACCCCCAATCTAGATTCTGAATGATCTGCGGCTATAGGTAGACTAATCCCCATTGGTTTCCTTACTCTGGCGCTACACTCAGTCCTACGGAGTATTTTTATACGCTATGGCAGAGCACTGTGTGAAAATACATGgcttattatttttgcaatctGTTTATGTGAATCTTTCCCTGAGCACAGTTGCTTTGGCAGagattgtgttttattcatgtcAGTTACAGTATTTAGTCAAATCCTCTGTCCATGGACAGACGCGATAGAGTTAAGAAGTCACCCTAAAGACTTGTAATACGTATGTTATTGGTCATTTAAACAAGAAGCTGATTCATTTAAGTCTTTGCCAGGTTTGAAACTATTGGGACATCAGCTACTGGGattgtagtagcagtagcaggGTTTTTAAAGTTTAACTGGATGGAGAACGgcacagagaagagagagagacggccCTGGACTCATTTCTAAGGATGTTTTATGGGAATTGTTGCTCTTCAAGAGTATCTTGGGCTTGAGTTTCATGATAATAGAGATCCAACGTCACACTGTGCGTATTACTGTCTGTGATATGAGTAGAGAGGTGCAGGGTGCCGAGGGATGGTTCGAGGCTTGCCGGCTGTCACTGCGCACCCAAACACAATTCTGGCATTTGACTGTGGGTGAGAGTCCTGGTGGTGAGAGTGGTCCTGATGTATTGACACAGGAGTCTCTTACTTGAAGACGGCTTCTGTAAGAgctgatgtttgttttagtcGAATTCTGCATTTTCCCCTCATTAAGTTATTAattgggatttttttgttatatttctctgttgtattttaagtttgttttgtcCTTAATCCACCTCTTCTCAAAAACACGTTGacccttgttttattttgatgcagGACGATGTACCATTCCACTAGGTGAATTAAGgagattttaatttctttcagtactgtaaagtttttgtttatttgaaggtGGTCATATGTATTAACTGTACAGTgtacaataaagcaaattataatttgtatttaactaTCACACTGAGTAGCAGTGATCAGTTGTTCAATAAGACTAAATAACCTGTATCCCTAAacataatgataaataaaatacttttttgtttaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58655 lncRNA upstream 184204 43919669 ~ 43919967 (+) True G47040
TU58645 lncRNA upstream 392160 43700924 ~ 43712011 (+) False G47032
TU58646 lncRNA upstream 399905 43700924 ~ 43704266 (+) True G47032
TU58532 lncRNA upstream 640165 43462771 ~ 43464006 (+) True G46949
TU58521 lncRNA upstream 652156 43432376 ~ 43452015 (+) False G46940
TU58703 lncRNA downstream 99377 44222408 ~ 44223401 (+) True G47080
TU58732 lncRNA downstream 166026 44289057 ~ 44291796 (+) True G47106
TU58733 lncRNA downstream 175238 44298269 ~ 44298664 (+) True G47107
TU58736 lncRNA downstream 206262 44329293 ~ 44329547 (+) True G47110
TU58802 lncRNA downstream 838578 44961609 ~ 44963472 (+) True G47158
AMCG00013824 mRNA upstream 407846 43687352 ~ 43696325 (+) True AMCG00013824
AMCG00013818 mRNA upstream 428930 43672233 ~ 43675241 (+) True AMCG00013818
AMCG00013816 mRNA upstream 435687 43657227 ~ 43668484 (+) True AMCG00013816
AMCG00013821 mRNA upstream 472573 43630468 ~ 43631598 (+) True AMCG00013821
AMCG00013817 mRNA upstream 483462 43618051 ~ 43620709 (+) True AMCG00013817
AMCG00013827 mRNA downstream 22440 44145471 ~ 44150277 (+) True AMCG00013827
AMCG00013829 mRNA downstream 80383 44203414 ~ 44221190 (+) True AMCG00013829
AMCG00013833 mRNA downstream 406687 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013834 mRNA downstream 512448 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013837 mRNA downstream 572748 44695779 ~ 44696771 (+) True AMCG00013837
TU58527 other upstream 663473 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 1014528 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 1059735 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 1455417 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 1662926 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 911741 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 1203627 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 1693341 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 1811628 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 2946670 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile