RNA id: AMCG00013834



Basic Information


Item Value
RNA id AMCG00013834
length 792
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00013834
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44635479 ~ 44661638 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGCCAAAGACGATTGCGGGGAAGATATTTGGATCCATCTGCTCTCTGAGTGGGGTGTTGGTAATAGCCCTTCCTGTCCCTGTCATCGTGTCCAACTTTAGCCGAATTTATCACCAGAACCAGAGAGCAGATAAACGCCGGGCGCAGAAGTTACagAAAGCCAGGCTGGCCAGAATACGAGTGGCAAAGACTGGGAGCTGCAATGCGTTCCTTCACAGCAAGAGAAACGGACTCCTCAATGAAGCCTTAGAGCTCACAGGCTCCacggaggaggagcagcagctgAGCAAATCCACCTCCATCATAGAAAGCCAACACCACCACCTACTGCACTGCCTGGAGAAGACCACAAACCATGAGTTTGTGGACGAGCAGATCTTTGAGCAGAACTGCCTGGAGAGCAGCCTGCAGAACTACCCCTCCCGCAGCCCGTCCCTCTCCAGCCACCATGGCCTCACCAGCTCCTGCTGCTCCCGCCGCGCCAAGAAGACCACCCACCTGCCCAACTCCAGCGTGCCCGCCACCCGCCTGCGCAGCCTGCAGGAGCTCAGTGCCATCCACATCCAGTGCGGGCAGCAGCCCCCGCTGAGCACCAGTCGCTCGAGTCTCAATATGAAGTCGGATGAGACCATCGGACTGAACTGCAAGAGCTCCCAGATCACCACTGCGATCATCAGCATCCCAACACCGCCGGCCACCACCCCTGAGGGCGAGGGCAACAACCACCCCTCCAGCCCCAACCGTCACCTCATGGGCAGCTCGAACATTGTCAAGGTGTCTGCGCTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58736 lncRNA upstream 305932 44329293 ~ 44329547 (+) True G47110
TU58733 lncRNA upstream 336815 44298269 ~ 44298664 (+) True G47107
TU58732 lncRNA upstream 343683 44289057 ~ 44291796 (+) True G47106
TU58703 lncRNA upstream 412078 44222408 ~ 44223401 (+) True G47080
TU58655 lncRNA upstream 715512 43919669 ~ 43919967 (+) True G47040
TU58802 lncRNA downstream 299971 44961609 ~ 44963472 (+) True G47158
TU58832 lncRNA downstream 606416 45268054 ~ 45268386 (+) True G47184
TU58834 lncRNA downstream 618116 45279754 ~ 45281095 (+) True G47186
TU58836 lncRNA downstream 621754 45283392 ~ 45283600 (+) True G47188
TU58837 lncRNA downstream 622202 45283840 ~ 45284159 (+) True G47189
AMCG00013833 mRNA upstream 104652 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013829 mRNA upstream 414289 44203414 ~ 44221190 (+) True AMCG00013829
AMCG00013827 mRNA upstream 485202 44145471 ~ 44150277 (+) True AMCG00013827
AMCG00013826 mRNA upstream 512448 44104171 ~ 44123031 (+) True AMCG00013826
AMCG00013824 mRNA upstream 939154 43687352 ~ 43696325 (+) True AMCG00013824
AMCG00013837 mRNA downstream 34141 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013839 mRNA downstream 239394 44901032 ~ 44919261 (+) True AMCG00013839
AMCG00013840 mRNA downstream 271662 44933300 ~ 44940161 (+) True AMCG00013840
AMCG00013838 mRNA downstream 397458 45059096 ~ 45065520 (+) False AMCG00013838
AMCG00013841 mRNA downstream 684969 45346607 ~ 45353929 (+) True AMCG00013841
TU58527 other upstream 1194781 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 1545836 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 1591043 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 1986725 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 2194234 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 373134 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 665020 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 1154734 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 1273021 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 2408063 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile