RNA id: TU58815


Basic Information

Item Value
RNA id TU58815
length 2071
RNA type TUCP
GC content 0.57
exon number 6
gene id AMCG00013838
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45034772 ~ 45095669 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggagggggcaTGCATCTCCACGCGTTTCTTACAGCTCTTCTCTTGTCTCTTCTTCGGCTGGAGCCTGGCTGTGCTGCGCGCTGGTCGGGACGTCTCTGCTCGGAGCTTCACCGGCTGCCCCTCACAGCAGCAGCCTGGCACGGCTGACCGGACGCCTTCTCCGGGAGTGGATCATTACACACAGGGATCAATCCCGCCGGCTACAGCTGCTCCCGGAGACCAGCATCCCTGACGCAGCAGCCCTGGGGCAGAGTCCAGCCCGGGCCAGGAGAGCGGAGCGCGGCGCGGCGGGCTCCGGGAAGAAGAGCGCACAAGCCGGGCGACGAACGGAGCGGCAGACTGGGGAGACATGGGCGCTTTTCCTAGGCAAGCACCGAGGATCTGAGCAGGGTCTGAGCAGGGCTGTTATGGGAGACAGGGGGAGGAAAGAGCTCCGAAGAAACCTCCAGAACAGGCACCAGAAAGCATGATCTCCTTCCTTCTTTAATTCCCCGGTACTTGGCGGTCTCAGCGGAGGGGATGGCGGTGTGAGATGTGCGCAGCCGGAGAGCCCGGGTGTTGGAGACGTGTGCGCACTGAGCGCAGAGGACGCGCTTTCTTCCAGCCCGGAGATGCGGCAGAGGGTGTCAGGGGCATCCGTGTCTGTACCCACCGTGTCCCCGCAGCCATGGGGGGGTCCTGGCCATTCATTGTCTCCATCTGAACTGGGATGTTACAGCATTGTTGACGAGGACGCGTTGTAAAGACGATGACATCTTTCTTATAGGAAGCTGGGCACCTCTGGCAACCGATGAAGATTTCCtattgtataaataacaatacagatCTGTATACCTATATACAGAAGTGCATCCAAAGGAACTTGCACCGACTTCCCCCTATGGATTTGTCCCCCTTCGTTTAaattattgattcatttaaatatatctattttttgcCATGCTTTggacaagaaaatacaaatgaacGACTGCACTCTTTGATTTTCATGTGATCGGATTGGTTTCCTCCACAGATAACTTTTTGGTCCATTTTGATCATTATCCGCGTTGTCGTTACACTAGGAGGGCTTTTCCTAAGGATTGCGAGACCTGTGGGATTACCCGCCGGCGGCTGGGGAGAATGCAGGCCGGCGTGAGAGCGCTGTGCGCCGGCGGCGGAGCCTCTCTCTGCTGCCTCCTCCTGCTGTGGGTCATCTACTCTCACTTACTGAAAGAAGGCCAGCTGGCAGTGGGGACCTGCGAGATCGTCATGCTGAATCGGGACAGCAGCCAGCCCCGCAGGACCATCGCCCGGCAGACCGCCCGCTGCGCCTGTCGGAGGGGGCAGATCGCGGGAACCACACGGGCCAGGCCTGCCTGTGTAGACGCACGCATAGTGAAGAACAAGCAGTGGTGTGAGATGGCGCCATGCTCGGAGGGAGAGATCTGCGGGCTGCTCATGAACCGCTCGGGCTGGACGTGCACCAAGGGGGGTGGCAGGATAAAGACCGTCACGCCTTTACCCAAGGAACCGTCTTAAAGTGTTCAGATATGCAAGGGGAGgtttcCTGACAGTCTTGGGAAATAGGAGAGATATCATTACCAGGCAGCATCGTGTCTCCACTCAACCGTACCTCTTCTGATGCCCACCTCTCTGTGGAGCTCACCATCTGTTGACTGTCCCCCCAGTTCCACCTACTCCACACCCAGCCAGAGACGGaccaccccctgccccccccaccaccctcacCTCCCAGCAGGCCAACACACCGCTCTCCCCAAGCCCACGAGCCAGCCAGCCCTCCAGACAGACGGACAGCCAGAAAACCATCCGCCCCACACGATGTCCGAGTCTGGACCAGCTTCAGCCACCAGTCTGGACTCAAGCcctttctctgtccctctctctccctctctctctctcactctctctttctcactgtgtcactctctccccctcctcctgtTCCAGAACGAGAGATGATACAGCTGGGGAAAACATGGGTTTCCTTCTATGtttatctttcctttttttacatATGGTTATTTTGAGTGAGACGACCATCTGTTCTCAATCTGGagctttacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58802 lncRNA upstream 71300 44961609 ~ 44963472 (+) True G47158
TU58736 lncRNA upstream 705225 44329293 ~ 44329547 (+) True G47110
TU58733 lncRNA upstream 736108 44298269 ~ 44298664 (+) True G47107
TU58732 lncRNA upstream 742976 44289057 ~ 44291796 (+) True G47106
TU58703 lncRNA upstream 811371 44222408 ~ 44223401 (+) True G47080
TU58832 lncRNA downstream 172385 45268054 ~ 45268386 (+) True G47184
TU58834 lncRNA downstream 184085 45279754 ~ 45281095 (+) True G47186
TU58836 lncRNA downstream 187723 45283392 ~ 45283600 (+) True G47188
TU58837 lncRNA downstream 188171 45283840 ~ 45284159 (+) True G47189
TU58838 lncRNA downstream 190847 45286516 ~ 45286853 (+) True G47190
AMCG00013840 mRNA upstream 94611 44933300 ~ 44940161 (+) True AMCG00013840
AMCG00013839 mRNA upstream 115511 44901032 ~ 44919261 (+) True AMCG00013839
AMCG00013837 mRNA upstream 338001 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013834 mRNA upstream 373134 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013833 mRNA upstream 503945 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013841 mRNA downstream 250938 45346607 ~ 45353929 (+) True AMCG00013841
AMCG00013849 mRNA downstream 324244 45419913 ~ 45431617 (+) True AMCG00013849
AMCG00013848 mRNA downstream 347417 45443086 ~ 45456185 (+) True AMCG00013848
AMCG00013851 mRNA downstream 395068 45490737 ~ 45494667 (+) True AMCG00013851
AMCG00013850 mRNA downstream 456304 45551973 ~ 45569316 (+) True AMCG00013850
TU58527 other upstream 1594074 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 1945129 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 1990336 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 2386018 42644987 ~ 42648754 (+) True G46723
TU58195 other upstream 2593527 42428101 ~ 42441245 (+) False AMCG00013770
TU58857 other downstream 230989 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 720703 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 838990 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1974032 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 3152398 48248067 ~ 48249713 (+) False AMCG00013961

Expression Profile