RNA id: AMCG00013839



Basic Information


Item Value
RNA id AMCG00013839
length 657
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00013839
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44901032 ~ 44919261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGCGCAGGGAGCTGGTGCTGCGACGCAAGAGAGAGGAGTACTTCGGCTTCATCGAGCAGTACTACGACTCCCGCAACGACGACAACCATCGCGACACCTACAGACAGCTTAGCTTCCCCGAGAACGTGCGCCGTAATTGCACATGGCGGGAAGTGGCGACATCTCTGCCGCTGATGGATGACACGCAGCAGGAGAAAATGGGCTCTGCTGCCACCGGGCTGCCTTGTTCCAGCTCAGCGGAGAAGTTTGATAACTATCACAACCAGGACCACCGCGACACAAAATCGAGGACGTCTGTAATGGAATTGTGGATTTCAGGGAACAGTTTGTCGGCTGGAGGTATCGGCTGTGGACTAATGTTTTTCCCCCGGAAGAATGTTCTGCCCTTGGGTGACAGCATGAATATTTACACTCGGAAGATCCACATCGACATTCCCAGAACCAACCCCTTGATTCCTCTGTTCCAGCAGGCGTCAGTTCAGGAGGTGTTCGAGAGGATCCTGTTCATCTGGGCCATCCGCCACCCAGCCAGCGGCTACGTGCAGGGCATCAACGACCTGGTGACGCCCTTCTTCGTGGTGTTCCTGTCCGAGTTTGTCGACGACTGCTACAACCTGAGCAGCCACTGCTTCGCCATCATCCTCTCAGTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58736 lncRNA upstream 571485 44329293 ~ 44329547 (+) True G47110
TU58733 lncRNA upstream 602368 44298269 ~ 44298664 (+) True G47107
TU58732 lncRNA upstream 609236 44289057 ~ 44291796 (+) True G47106
TU58703 lncRNA upstream 677631 44222408 ~ 44223401 (+) True G47080
TU58655 lncRNA upstream 981065 43919669 ~ 43919967 (+) True G47040
TU58802 lncRNA downstream 42348 44961609 ~ 44963472 (+) True G47158
TU58832 lncRNA downstream 348793 45268054 ~ 45268386 (+) True G47184
TU58834 lncRNA downstream 360493 45279754 ~ 45281095 (+) True G47186
TU58836 lncRNA downstream 364131 45283392 ~ 45283600 (+) True G47188
TU58837 lncRNA downstream 364579 45283840 ~ 45284159 (+) True G47189
AMCG00013837 mRNA upstream 204261 44695779 ~ 44696771 (+) True AMCG00013837
AMCG00013834 mRNA upstream 239394 44635479 ~ 44661638 (+) True AMCG00013834
AMCG00013833 mRNA upstream 370205 44529718 ~ 44530827 (+) True AMCG00013833
AMCG00013829 mRNA upstream 679842 44203414 ~ 44221190 (+) True AMCG00013829
AMCG00013827 mRNA upstream 750755 44145471 ~ 44150277 (+) True AMCG00013827
AMCG00013840 mRNA downstream 14039 44933300 ~ 44940161 (+) True AMCG00013840
AMCG00013838 mRNA downstream 139835 45059096 ~ 45065520 (+) False AMCG00013838
AMCG00013841 mRNA downstream 427346 45346607 ~ 45353929 (+) True AMCG00013841
AMCG00013849 mRNA downstream 500652 45419913 ~ 45431617 (+) True AMCG00013849
AMCG00013848 mRNA downstream 523825 45443086 ~ 45456185 (+) True AMCG00013848
TU58527 other upstream 1460334 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 1811389 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 1856596 43039984 ~ 43044436 (+) True G46840
TU58242 other upstream 2252278 42644987 ~ 42648754 (+) True G46723
TU58196 other upstream 2459787 42428101 ~ 42441245 (+) False AMCG00013770
TU58815 other downstream 115511 45034772 ~ 45095669 (+) True AMCG00013838
TU58857 other downstream 407397 45326658 ~ 45360882 (+) True G47206
TU59011 other downstream 897111 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 1015398 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 2150440 47069701 ~ 47073708 (+) False AMCG00013919

Expression Profile