RNA id: AMCG00013852


Basic Information

Item Value
RNA id AMCG00013852
length 594
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00013852
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45653353 ~ 45656372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCAGCAGCTGAGTGAGGAGACGGAGAATGCGGAGATTGACGTGGCCGAGCTGCAGGAGTGGTACAAGAAGTTCGTGGTGGAGTGCCCCAGCGGCACACTCTTCAAGCACGAGTTCAAGGGCTTCTTTGGGGTGGCGGACAACCAGGAGGCGTCCGACTACATCGAGAACATGTTCCGCGCCTTCGATAAGAACGGGGACAACACTATAGACTTTTTGGAGTATGTGGCAGCACTAAACCTGGTGCTGAGGGGGAAGCTGGAGCACAAACTGAAATGGACGTTTAAAATGTACGACAAGGACGGCAACGGTTGCATTGACAAACCTGAGCTGCTGGAGATTGTGGAGTCTATATACCGGCTGAAGAAGGCCTGCCATGTGGAGACGGATGAATCCTGCCACCTCCTCACTCCAGACCAGGTTGTGGACAGGATATTCCAACTAGTTGATGAGAACGGAGATGGTCAGCTGTCCCTGGACGAGTTCATTGATGGGGCACGGAGAGATAAATGGGTGATGAAGATGCTGCAGATGGACGTGAACCCGGGCGGCTGGATCAACGAGCAAAGGAGGAGGAGCGCCATGTTCTAG

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58933 lncRNA upstream 11716 45639864 ~ 45641637 (+) True G47264
TU58928 lncRNA upstream 28782 45624372 ~ 45624571 (+) True G47262
TU58924 lncRNA upstream 30547 45622587 ~ 45622806 (+) True G47258
TU58917 lncRNA upstream 33121 45616133 ~ 45620232 (+) False G47255
TU58920 lncRNA upstream 34283 45616133 ~ 45619070 (+) True G47255
TU58990 lncRNA downstream 125654 45782026 ~ 45800423 (+) False G47320
TU58992 lncRNA downstream 125654 45782026 ~ 45800423 (+) True G47320
TU58994 lncRNA downstream 125654 45782026 ~ 45791104 (+) False G47320
TU59012 lncRNA downstream 162579 45818951 ~ 45823228 (+) True AMCG00013872
TU59015 lncRNA downstream 169940 45826312 ~ 45826652 (+) True G47336
AMCG00013855 mRNA upstream 16784 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013853 mRNA upstream 19877 45628387 ~ 45633476 (+) True AMCG00013853
AMCG00013854 mRNA upstream 51161 45598723 ~ 45602192 (+) True AMCG00013854
AMCG00013850 mRNA upstream 84037 45551973 ~ 45569316 (+) True AMCG00013850
AMCG00013851 mRNA upstream 158686 45490737 ~ 45494667 (+) True AMCG00013851
AMCG00013862 mRNA downstream 25708 45682080 ~ 45695028 (+) True AMCG00013862
AMCG00013863 mRNA downstream 63848 45720220 ~ 45740542 (+) True AMCG00013863
AMCG00013873 mRNA downstream 137163 45793535 ~ 45798941 (+) True AMCG00013873
AMCG00013869 mRNA downstream 144546 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013872 mRNA downstream 160281 45816653 ~ 45821139 (+) False AMCG00013872
TU58857 other upstream 292471 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 557684 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2212655 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2563710 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2608917 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 160000 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 278287 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1413329 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2591695 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2597922 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile