RNA id: AMCG00013862


Basic Information

Item Value
RNA id AMCG00013862
length 4544
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00013862
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45682080 ~ 45695028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgggggCCATTTTACCCTTCGTGTTCCCAGGGCAAAAGGAGGAGGGGAAAACAGAAAGTGGCGAAGTGCAGCCAATGCACCTGCCGCATACCGAGATACAGGAGACCCACAGGGAGACAGGTGCTTTTTGATCACATTGGTgggagaaaatatgaaaaagggGACTTTGACGTGGTTGGGTCGGAAACCCCAGTCTCTGTACGACACTAGTATCGAGAAAAGAGATTTGGACGATGTGGAGTTAGTCCTGGATTCCACTGCTTTTCCTGAATCGGGGACAGCCAAAGTGCGAGCCAGGCCCACAGTCAAACACTACTCCACTTTCCACACCCCATCCTCTGATATTGTGCAAGGCTTTGCAGTCCCAACTCCTCAAGTGCCACCTGTTGTGAACGGGCCGGGGATCACAGCAAGAGAAAACGGAGAGAAGTCTGCCAGATACATGAACGGACTGATGGAGGAGAACATCTACATCCCTCCCCCTCCGGCAATGAAACCCCCGCCTCCCCCGCAGCAGTTTGTGCCCATTCCTCCTCCCACCAAGTTTGCTGGGGACTCTGTGCCCATCTCACCCACCTCCCCAAATGTGGCCTTCTTGAAGCCGCCGCCCATGTCTACTCCGAAGCCACCCGGTCAGCCCGTAGTGAAGGAACCAGACCTTTATGCTCTCAAGCCACCGCCGATGGCTCCGCCTAAGCCTCCCACTAACACCAAACAGCCACCCCCATCTCCACAGGTTGATCCAAACTTGAGCGATGACTTCACCATCCAGCGTCCAAGATATGCTCCTCCCATGCCCCCCATGGTGCCCCAAAAAGACACCATTCCACAGCCCCCACCATCCCGTGCGCCGGGCCCACCTGTGCTACCCAAAACCCCCAAAATGCCCCCTCCCAAACCCCACCGGGATTCCTCCATGCCGAATCGAGACGTGGCGCTGCAGCCGCCCATCCTAGACCAGCAGGGTTCCACCCCCTCCAGCTTCAATCCCCAGAACACGGCCAAGATCTACAGCACGGGCAAGACGGCCCCGGCAGATGGACagtcggagagagagaggaaggccAAGTCCTTAATTTTCCTGCAGGATCCAAACAGGAATGTGCTGCCCATCCAGGTGAATGGGAAAGCCACTACCAACGACCAGGATCTAAGTTCCAGTATCCCAGTGAAATCCCTAACACCGCCGGTCAAACCTGCTCGGAGGAACAGCTCCGGCCTCCAGCTGGAGAAGGATCTGCAGCCATTTAAGGACAAAATTCCATCCTACACCCCTATCTCCATCTCCAGGACACCACCCAAGCCTGGGGCAGGGACCCATGAGGTAGATGCCACAATACCGGCGGCTTCAGCAAAAGTGAGCCCACCTACGGACACTTCCAATCTTTCCTCTCGGCCCGCGGCACTGGCAATATCCCTGCCAAAGCCTGAGGACGTCCCCAAACCGTCGCTGGCAGTGTCTCCGCAAGAGATCCCCCAgccctcactctctccctgcGGCCAGGAACTGAACTGGAGCAGACCACCACCGATCTCGCCGATCAGGCACCAAAAGCACAACATCAGTAGGACGCCCTACCCTCTCCGTGCCACCGATGTCCTTTCTGCCTCGGGACCCTCTCAAAAAGACCGGTCTAAGTCCCCACTGGATCTACTGAATGCTGCCAAACAGAGGAGCCAAAACAGACCCACCCTGACCAGccagagcaacaacaacagcagcagcagccccttACCCAGTGCATCTCTTGGGTCAAGCATTCACCCCAGTGAGTCAAATCCCAACTCCTTCACGGTGACCCCCAGGAGTCCCGGGAGCCTTGAAAGTGCTGGATCCATCTACTCTATACCAACGCACAAGGCGCCAAACTCACTGAACTCCCCAAACTTCTCCAGCAGCACCCTAGTGTCAGAGCACCTGAATAAACTCAGGACTGACTCAGTCTCGAGCACATCGTCCCCAGTGTCCGTCAGGGATGCAGAAAGCGGGGAAGACACATTCTTTATCCCACCCCCTCCTGAATTCGCCAACTCGGACATGGAAGAGGAGAGCTCCCCAGTCCAGAGAGACCCACCTCCCAGTTGGCTTTCCTCCACCACAGTCCATCAAAATAACAACCCACCTCCCAGTACAGAGGTCAAAGCTCCTGCCAGCTTGGTCAATAAAAGCAAGGCTCCCCTGCCTCCCCCAAAACCCCAAGGTAAGGCCCCGGTTCCTTCTCCACCCCGATTCCCACCCCCAAAGTCCCCGACACAAGCCAAACCAAAACCCCCAGCCCAGGCCTCGGTCAAGCCTGACACACCAGCTCCCGCTGGCCTCCTGGCCCCCTCATCAGCTCTCACGCCCAGTCAGATGACCCTCCAGAGCATCTTGCAGAAGAAGATGCTGGAGATGGAGCAGAAGCACGTGTTCCAGCAGGCCGAGGCCAGCAGCGACGAGTGGGGGACCTCCTACTCCGAGGACGAGAGCAGCGGGCCGGCGAAGCCCAGTTTTGTTCGGAAGGACCGGAGTCCCACTTCCAGAGCACCGCCTGCCCAACTGCAGGACCAGTTCCTCAATGAACTTGGAACCAAATTGGGGAAGAAACCTACGGTTCCCACAGCCACGACAAAGACCGCTACCAGCAGTGAGCCACAGACCTCCAAGTCTAAGCAGCCCTACGGAATGACCTTTACGGTGCGACCCGGAACCAAACAGCCCATTACCCTGGTGAGCAAAGGAGAGCCCATGTGAGACGGACACTCCGGAGCGGTCTGGAACACGCAAGACTTTTAATGGCTTCCAGGAGCTGGGCTGCGCTGCTCCACCTTGAAACTAGGGGAGGAAGGACCTGTctagagagatggggggggggggcttctgGTAAAGAGATTAACTAAAAGCACTTAGCTTGCCTTGTcaagttgtttaaaatgtatatactccAGTTGTTGGAGTGAGACTGtaataagtaaatgaataattatatatatcaagCATATGCCATTTAGGAAGATGAGAAAAGGTAGCTTTCTGACGATATATTGGTATGGGGACAATGTTACCAACCCTTCAGTGGAGAATGTTCTCTGCATCGAAAAATGTGCTCCTGGTTACGTTGACAAGCCTTAAAACAGCGACTCTCggctgtaaaatgttttcagtgttaCACCAAATCACTGCTCTCCTTCTGCTGCAGGAGCCGTTTGTATTCACAatctttgtcatttgttttaaacagtgcaCAGGTTagagttctctctctctctctctctctctctctctcaggtggggCAAAATACTGCCCAGGtccttaaaagaaaacaaaaaacatatacagctgtggaaaaaattaagagaccacttaacattgatttctgaacttggggtgatctcatttttttccagagctgtatattatacTCCAGCCTGTACAGTAAATATCTAAGTATCTGCTTTTTATATTCGTGATCTATAACCCTGAATCTATTTAGGTTGTTTTGTAGCTCTTAGTTATAAGTGGCTATGGTACCCAGAAGGCAGTTTGAAAGAAACAAGgatacaaaataacacacaaaagtGATACAAGACTTGCATTACCTGGGATATGAAGACGTCGGCCTTAACATTTTGTTCTGGGTCTAGTGGCCATTCCTTGTGATAGTAACATGGATGAAGCTGAGATTTGTACTTTTCATAATCTGACCCGTCTCAGGGGAGGGTGACAGCAGCCAGATATTGAAAGAGAGacgttcttgttttgtttatttaaaagacTTTGTTAtcgttttattatttgaatgtctatttttttcatgtcgcgtttttcattttcttgtctGCCACCCCCCGGTACCCTTGACATAGACTGGGGGTCCAGAATTCATTGGCCGGGAGCTGGGAAATGTgagatttgaaattaatttggctTCAAAATCTCAGGACAAGTAATGCCACCCGTGAGCAAAGAGGCGTCCTCTCTGGTCCCAGCCAGTTTATGACCACGACGCTCCCCAGGTGCCGCGACGGACGGCAGTAGGGCTGTGTTGGAGGGACAGGAATGATTACTTACCCCGGCACATTACTGACACTCTTTCATCAGAGAGGAGCCACTGTCACAATAGGTATCGAGTCccacaattacaaatataaaaatggccGACACTAGTATCGCCACAATTCAGAGCGGTGTTGCGGAAATCACAATCCTTTTGTACTGAACACCGATGGCCAAGACACAGTACTGAACACTGCTGTACCACTGGAAAAGGGACTTGAGTTACACTGTGTCCAGCCTGTCTTTGTGAGAGGGGAAAAGAAGATCTGTATATAGAAGAATGCTAATTAAGTACATCAATGGCCAAATTACTGTATTAGGATCCAAAATGTTGCAGGACTAGTACCATGCAGCTGTAGAAGAGGACCTTACGCTACTctgtgcctttttgttttgtgaatgtgaGGGGGGGGGATCTGTACATACAGAATAAAGTGtataaactttatattttatttaacatgcagaggaatccaaatgtatttaagaatAAAAGGTCACATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58933 lncRNA upstream 40443 45639864 ~ 45641637 (+) True G47264
TU58928 lncRNA upstream 57509 45624372 ~ 45624571 (+) True G47262
TU58924 lncRNA upstream 59274 45622587 ~ 45622806 (+) True G47258
TU58917 lncRNA upstream 61848 45616133 ~ 45620232 (+) False G47255
TU58990 lncRNA downstream 86998 45782026 ~ 45800423 (+) False G47320
TU58992 lncRNA downstream 86998 45782026 ~ 45800423 (+) True G47320
TU58994 lncRNA downstream 86998 45782026 ~ 45791104 (+) False G47320
TU59012 lncRNA downstream 123923 45818951 ~ 45823228 (+) True AMCG00013872
TU59015 lncRNA downstream 131284 45826312 ~ 45826652 (+) True G47336
AMCG00013852 mRNA upstream 25708 45653353 ~ 45656372 (+) True AMCG00013852
AMCG00013855 mRNA upstream 45511 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013853 mRNA upstream 48604 45628387 ~ 45633476 (+) True AMCG00013853
AMCG00013854 mRNA upstream 79888 45598723 ~ 45602192 (+) True AMCG00013854
AMCG00013850 mRNA upstream 112764 45551973 ~ 45569316 (+) True AMCG00013850
AMCG00013863 mRNA downstream 25192 45720220 ~ 45740542 (+) True AMCG00013863
AMCG00013873 mRNA downstream 98507 45793535 ~ 45798941 (+) True AMCG00013873
AMCG00013869 mRNA downstream 105890 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013872 mRNA downstream 121625 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013871 mRNA downstream 138793 45833821 ~ 45846136 (+) True AMCG00013871
TU58857 other upstream 321198 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 586411 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2241382 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2592437 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2637644 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 121344 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 239631 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1374673 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2553039 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2559266 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile