RNA id: AMCG00013863


Basic Information

Item Value
RNA id AMCG00013863
length 4039
RNA type mRNA
GC content 0.58
exon number 23
gene id AMCG00013863
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45720220 ~ 45740542 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACAGGTGAGGCTTAGCTTAAATACAGGCAGGAGGAGTGGCAGAGCACCATACCCGAGACTCACTACACACAGAGCACAACCACTGCCATCTCCAAACACTGCGCAACGTAACACACCAGGAGCTGGTGgtgcaaaagaaaagaaactcaAGATGTGGACTCTACTCCCGTTAGTAGtGCTGGTGGCCCTTTCTGTGGCCCAGGAAGACTGCAATCGAGGCGCCTGTTACCCGCCCACCGGAGACCTGCTTATCGGCCGAGCCAGTCAACTAGAAGCCTCTTCCACCTGCGGCATGACCGGCCCCGAGGTCTTCTGTAGCCCCCTGGGACAGTGGAAGATGAAGTGCTGCCCATGTGACTCCAGGGACCCTTCTTCCCAAAACGCCCATCGCATCCAGAACGTGCTCTCCCAGGCCGGGCCCGACAGGTGGTGGCAGTCCACGAAAGATGTGAATCCCGTCACCGTGCAGTTTGACCTTGATAGCACGTTCCAGCTCAGCGAGTTGGTCCTGGAGTTCAAGggacCCAGACCGAGCGCCTTGGTGATTGAGCGCTCCACAGATTTTGGCGTGACCTGGCAGCCCTATATGTACAGGGCGTGTGACTGCAGCTCCTCCTTCCCGTCCATCAGCACCTCTTCCCCCCGCACACTGCATGACACCCAGTGTACCAAAATGGCCCCTGTGCCCACCAACAACTTCTACCAGGATCATACGGTGCAATTTAGTCCTCTGCTTCAGCTGGCTGACGTCAATGTGCCACAGAGCCAGAAGATTGAGAgTATGGCAGACTTCACCAACTTGCGTGTGAACCTGACCAAATTGGGCCGGGCACCCCCTCTGAGCAATGCCCGTGCATCCAGCGCTCTGTACGCCCTGAAGGAGATGCGGGTACAGGGCACCTGTTTCTGCCACGGCCACGCCAACCGATGCCTGCCCAGCGCCACGCAGCCGTCCAGTGTACAGGTGAACAGCGTCTGCGATTGCCAGCACAACACAGCGGGGGTGAACTGCGAGCGCTGCGCCGACCTCTACAACGACCTGCCCTGGAGACCCGCCGAGGAGTTCAACACGCACCAGTGCAAGAGGTGCGAGTGCAATAACCATTCCCAGCGCTGCCGGTTTGATCCAGCGGTGTTTGAGGCCAGTGGTAGGGTGAGCGGTGGGGTGTGCGAGGACTGTCAGCACCATACGACCGGCCCCAAATGTGACAAGTGCGCCGCCTTTTACTACCGCAACCCTCGGAGCAGCATGAACCGACAGGACGCCTGCCTGCGGTGCCAGTGTGTGAACGACGGCAACGGGCAGGGAAGGATGTGCGATCCGGAGACGGGGGTCTGCCTCTGCAAGGCCAACGTGGAGGGACCCCGCTGTGATCGCTGCAAACAGGGATACTATGGCTTGAGCCCCTCGGACCCCATGGGATGCAAGAAATGCCCCTGCAGTGCGGTGGGCTCCAGCAGAGGTGCGACTTGTGATGCAGTGACCGGCCAGTGCCAGTGTCTGCCTCACTTCGTGGGCCAGACGTGTGAACGCTGTGCCGCCGGCTACTGGAACCCCTTGTCTGGCCAGGGCTGCGAGCGCTGCAACTGTGACCCCCGCAATTCCTACAGCTCCTCCTGCGACCAGTTAACAGGTCAGTGTCAGTGCCGGACAGGATATGGGGGACGGACCTGCACAGAATGCCCGGACAACACCTACGGAGACGTTCGCAGAGGCTGCAAGCCGTGTAACTGTGAGCAGGCGGGCACCATGAGGCCCGGCTGTGACAAGACCACGGGCGCTTGTCTGTGCCTGCTGGGCATGACTGGGCCTCGGTGCGACCGGTGCCAGCGAGGGCACTGCGATAACTACCCCAGATGCGTGCTCTGTCCCTCCTGCTTCTTCTCCTTGGACAACGATCTCAAAGGCTTCTCCAGCACCCTGGCCCGTCTCTCCTCCCAGGTCACAAACCTGCCAGGCTCCTCTGGGCAGGACTTGGGCCCCAGGATCGTTGGGCTGGAGGCCATCCTCCGACAGATCAGGGACCAGCTGCCCTACCCAAACCCCATTGACAGAGAGATCACTGACAGCATCACAACACTGAACAGACTGAAggCTGAGGCTGGCCGTTTGAACCCTGACCTCTTCCCTACGGATCAGAGCCGGGCTCTGGACCGACAGATTGATGACCTGAGGGCCTCGCTGCTTCTCCTCACCCAGCAGTACAACATCAAGAGGGAACAGGTCACCAAAACTGTGACCACAGACCCTAGTGGAGCCTACTCTACCATCACCACAGCCTACAAGGAGTCCACAGACGCGATGAAGAGCGTGGAGGGCAGCCAAGGGGTGGTGGACCAGTCCGCCAAGTTGCGGGGCGATGCCATCGACCTGGAGGGGCAGGTGCAGCCGGGCAACACAAGAGCTCTGGAGGACCTCAACAACCAGCTCCGCACACAGCCCAACCTCACTCCCACCGCCCgcaagGTGTGTGGCAGCACCCGGACCGCCCCCTGCACCCCCAAGGAGTGTGGTGGGCAATTGTGCCCTGGCCCAGATGCGCCCCCTTGTGACGGCAGGAGGACCTGCACTGGAGCTCTGCCTCTCGGGAAGAAGGCCCTGGCTGACAGCGAGGAGGCCCGGTCCAGACTGAGGGAGCTCACCTCGAGAATCCAGCAGGCAGCGGCAGAGATCCAGGACACGCAGGATTCGGCCAATCAGGCGAGACTCTCTACAGACCAGCTGGCCAATCGGATCAAACAAGCCAGAACTGACATGGACGCAGACATGCAGGACACACGGAACTTTGTCAGGCAGCTGAGGGACTTCCTGACTGACCCCACCACCGACCCTGCCACCATCCAGAGAGTGAGTGAAGAAGTCCTGGACACCCAGCTGCCCCAGAGCATGGACGCCCTGCGCAGGAAGTTGGACGAAATCAGGCGTATTGCTGCAACCCTGCCTGACAGCACCGATGTCTTGAGCAAGACTGGCCCAGAGCTGGATCGTGCCCGAAAGCTGCTATTGGAGGCAGAGAAGGCCCGGGACAAGGCCAATCAGATGAATGAGAACGTGGAGGGGCTGCTGGACAACCTGGGCAGCGTGGAGAGCTCGCTGGGCGAAGTGGAGAAGAAGATCCGCAGCAGCACTGACATCGTGAAGCAAGTGCAGGACAACATTGCAAACGATCTGGTGAAGAAGAACGCCGGCCTGGCCACACAGGCGGACACAGATGCCGATCTGGCCCAAACTGAGGCTGATCAGGCTGCATGGgacCTGAAGGACCTGGAGAAGCAGTACAGCGTGCTACAGCAGAAGGCATCAGAAAGTTCGAGCAGAGGGGAGTCGGGCCCCATGGACGACAAACTGCGGCAGCTCCAGGGGCAGGCTGGGGTCCTGATCCAGGACAGCATGGACATGATCAATAGACTCTCAGGCAAAGAAGGTGCTCTCCTGCAAGCCAACGAGGAGCTGATCCAGAAGTCCCAAAGTCTGCTCAACCTGGACACAAAAATGGAAGGCATCCTGGCAGACATCCGCGAGAAGCAACGGCGCCTTAGCATCTGCCAGGGATAATTGCAGCCCAACCCCGTTCAGGGAACTGTCCGGCACCTCCCAGCCCATCTGTTGACTGTTCAGCACGATGCACAGCTTCACCTGTCGCTGAcaacatcattatttattctattttcaattgaaaaataaaacactatcaGTTAGTAGCTCTCCTTTAGGCAACCGACTAACAAACACATTGGAGCAGTTCAGTGTTGAGAGAGATTATATCTTACAGTATCTATAGACCTACAGACGATCCCCACCGTTCTCTCCAGCAACCTTAAAATAATCTCCTCCATCACTCCTGCACATTGTTTTCTCTGCAGGTTTGTTGGGAAGCTATCGCCCCCTGGTGGCAATTAACTCCCTCACACTGTTGACAGCAACTGTACTCTTCTCAAGCACTCAAGTACATTAACTGGCCTCTGGTCTGTGCTGAAACCAAGCAGGAAATAGCGATGCCTGCAAACCTCTGGTTTGTCTTTTCTcaataaaagca

Function

GO: NA

KEGG:

id description
K06244 LAMB3; laminin, beta 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58933 lncRNA upstream 78583 45639864 ~ 45641637 (+) True G47264
TU58928 lncRNA upstream 95649 45624372 ~ 45624571 (+) True G47262
TU58924 lncRNA upstream 97414 45622587 ~ 45622806 (+) True G47258
TU58917 lncRNA upstream 99988 45616133 ~ 45620232 (+) False G47255
TU58990 lncRNA downstream 41484 45782026 ~ 45800423 (+) False G47320
TU58992 lncRNA downstream 41484 45782026 ~ 45800423 (+) True G47320
TU58994 lncRNA downstream 41484 45782026 ~ 45791104 (+) False G47320
TU59012 lncRNA downstream 78409 45818951 ~ 45823228 (+) True AMCG00013872
TU59015 lncRNA downstream 85770 45826312 ~ 45826652 (+) True G47336
AMCG00013862 mRNA upstream 25192 45682080 ~ 45695028 (+) True AMCG00013862
AMCG00013852 mRNA upstream 63848 45653353 ~ 45656372 (+) True AMCG00013852
AMCG00013855 mRNA upstream 83651 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013853 mRNA upstream 86744 45628387 ~ 45633476 (+) True AMCG00013853
AMCG00013854 mRNA upstream 118028 45598723 ~ 45602192 (+) True AMCG00013854
AMCG00013873 mRNA downstream 52993 45793535 ~ 45798941 (+) True AMCG00013873
AMCG00013869 mRNA downstream 60376 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013872 mRNA downstream 76111 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013871 mRNA downstream 93279 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013870 mRNA downstream 114910 45855452 ~ 45876895 (+) True AMCG00013870
TU58857 other upstream 359338 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 624551 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2279522 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2630577 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2675784 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 75830 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 194117 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1329159 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2507525 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2513752 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile