RNA id: AMCG00013868


Basic Information

Item Value
RNA id AMCG00013868
length 4895
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00013868
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45878098 ~ 45885313 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGACCAATTGTAGACTTGTTTTTACGGCTGTCCAATAAAGTACAAGCACACAGCTCCTGTATACGTGCCTGGGAGTAATCCTGCGGAAGGGGACCTCAAGGTGCGGCGGATTGTTTTGTTACGCGCCGCCATTTTCTTGGGACCAGTCTCTCCTCTCGCTGGCCGGTGGCGGAACTGCATGCTGGGTGTTTCAAGCCAAGAGCGCACAGACAGGGTAGCCACCCCAGTGAATTGAAAATACCGAAGAGGAGAcgaaagaaatatattttcccgATAAAAGATGGATAATTCAAGGATGCAGGAGAGTACCCCTCGCTCGGCACCTGTGTGTCCTTTGTAAAACTAACAGTCCGTTCATAGTGTcagcgctgctgctgctgctgctgacaaAAGGCACCTCGTCCCAACCTGAATATCAATCGCAAATCACCATGAATAATAACTTAGTAAAAGTTACAGTTCCTGTTCAAACCAAAGAGAGCCCAGCTGCCGTTGCTACCCCCAGtgtcaCACGTGGGTATTATCAAGTAATGCCCACTGTTGCTTCTAATGGAAAGAATATTCTGAAACTGATTCCAGTTAAGAAAGTTGGTGGGCAGTTTGTTCAACTACAAGCAAAAGTAAATGTGCCAAGCACGTACAAAAAACCTGATGCTGAACCAACACGCTTCACCCCATCTACAATCCAGTTTTCACCTGCTACAGTTTCCTCTGGTTCAGTCCCAATTCTACAACAACCCAACCCTGGGAAATACATTCTAAAAGCACAACCGGATGGTAAAATTGTGTTGAACCCAGTTAGTGGACCAGCACAACCCCAACAGAGGATGCCTTTTGCTTCAACAAGTTCCCcagttcaggttcaggttcccATGTTGCCACAGAAACGGCAGCAAAGCTTTCTTCCAGTAGGAACCCCTTTAATAAATGCTGGTAAAACGGTTTCTTTGCTAAATATGAAACAGCTGCCTGTCACTGTAAAATCACCAGTGCTTCCCAATGGGCATTATCTCCAAATCCCTGCCAATGCAGAAGTGAAATCAGTCCCCACTTCTGCTCTGCCCCATGCcattaagaagaaaatattagCTCAAACTTTTAACTGCAGTTCAACCACTTCTGATCCTACTAGAAATGTacaaactgtaatttatgtGTCACCAGTTAACACCATTAATACAATGCAGACTGTTCCCGTCACGTCAGCTTCACAAGCACTCTCTCAGCTGCTCAAAGTCACTACGCAGCCAGTTGGTAATAATCCTGGAACCACCACAACCCAACCTGGAAAGCCTCCCTCTAATGGGAGTCAAAGTTCAGGGCAGCCGATAAAATGGGTAGTGCAAGAAAATCCGGATTCACCAGCCCCCTGTCTTGTTCCCATAAATTCAAGAACCATGACTTCCAGTATTTTGAAAACTCTTGCACAGATTGAGAAAGCGGAAAAGACTGGGCAAAATGTGACATTGAAAACCAACGTTTCTCAAAACACCCAACCAAATATCACTTCGGGGAAGGACAATGCTTTGGTCATGTGTAATGGGAAGGTGTATTTTGTTGCCAAGAAAACTTCAGAATTCACTAATCTCCAAGCCCAACCACACAAAGCCGGAGAAAGCATTAATAAGAATCCTACGCAGACTCCGGAGGCTGGCTGTGCATTAAATCAGCAAAATCAGCCTTCCCCTAAGAGCCAACCTTCCAGTTCCACTTGTGTATTATCTGCATCAAATGTACCTGCCCTAAACACAGAGCCAATTGTGATTAAAGATGGCCCTGATGAAATTGTTGACTTATGTAGCGAAGGACTTCCAGATGGATCTACAAGCCAGCAGAATGAGAACTGTAATGTGTCACAGCCCTCCACCAACCAGACGGCTAGTATTGAGGATGATGAAGACTCAAATGTGatatttgtttcatatataCCACCAAAAACAACTACTTCATCtagtaaagaaaatgaaagcattCCAGTAAAACTACCCAGTACCCAAACCCAACTTGAAAAGAGCCCTGTCGATTTAGTTCAAGAACAAAGCACCCCTGCTTTAGAAGAAAACCAAAAGTGTGAAAGTGACTCGCAACTGAGGAAGAGGTTTGGGATCAGATCGGAAATTAAGATCCGGTTACAACAAATTCGTCCTCCGGAATCTAAACCACAACCAGAGAAGATGTCTAAAATGGTTTCAATCAACAGGTGCACATTGGAAGGCATCCGTAAATTAATACGGGGGGCAAATATTGATGTGAAATCGAGGAAACGCACAGAAACTGAGAATGCGATACAATCTGATGGTCATTCTCCTCaaaagagaaaaactgaaagcaatCCACATGagatgaagaaaagaaaaatagaaatactCAATAATCCCCCTGAAACAGCCTCTTTGAAAATCTGCAAACCTCCTGCTTCAGAAACTGTTAACCCAGTATCAAAGACCTCCTCTGCTGCAAAAGTGGTGGAAAATAAAGGCAACGATCTCTGTAACCAAACAAACGTTAAAGTAGCTCACGAGAACTCCGGGCTGAAGGTGACTAGCCCAGTTTCGGAAGCTCGGTCAAATAGCAAACCAGCAGTGAAGAAAAGTGACAGCCCTATGAAAAAGGAATTGTCACATGCAACCGCAGATCCCATTAAAATACTAAAGGCCACTGAACCCCTTGCTTCAGGCTCAGACATGCTATCAAAGACAGTGGTTGAGACCGCAAAGCCCGCCCATGCTGCAAGAGACATCGGACAACCTCCAGCATCAGAAATCAGGAGAAACGTGGCAAAACCGATCCCATCTCCAGAAAGATCAAAGACCACTCCATCCTTGCTTAGAGAAATGCCTGATCCATCACCGACCGGAACTAGTAGAACAGAATCGCAAGAGATTAAGGCACCACATAATATATTACCAAAGGCAACAGTGGAGGAAAGTAGAGAACAAACGTGGGTACCCGCGAATGCTGAAAGTTCTCCACCAGTGGAGATTTGTACCCGGTCGGTGTCTGGTGAAGGTCATGCTGGACTGTGCTCAGGTGATGATCTCTATATGGTAACGCCCATGGATGCAGAGGAAATCGTGCGTGAAGAGAAAATCAAAAGGCTAAAGGAACTTTTAAGGCAGAAGGAAGCTGCACTTGATGCAATAAGGAAGAAAGTGTAAATTGCTATTTAGTTAAATTatctattgtttatttaaacctAATGCAATTGATgtagcttttttaaatgtgcaacaTAGCAGGAATTTGGTATTTTTATCAGAgctgtacttttattttagCTTACCGAAGCTAAACTGAGGCTCACTCTTCTTCAAACTGTTTTTCTATCAACTCAAATTGATATCCTTAAGTCAACTTGtacaattcagattttttttttttttaatacacaaaaagTTCCAGAAGCCATTCCTAAAACCTCTGTGTTCATGGCTTCTCTGTTCCTTTTAATGAATCCATTTAATcaagctttttttaaaattgGAAGTCTTGTCGTAAGTGGTTAGAAATAATGTTTACAgctcatgtttatttatgtttatgccaGAAGGGGaggtttgttttcaatacaattaatttatttatggttgGGGACCTTTGGCTAACTATTTAAGTATTGTTGAgggtctgtttgtttctttgaggAGAAATCtatttgcaaaatgtatgcTTAAAATGGAATGTTTAGAAAAAGATAATCGAAGTGTCATGGGGTTctacaaatgtgaaaatacataaagatgtacatctttttattattagacTGCCTGTTTTAAGAAGCACATATAATACATTCTGAAGTATTCTGGAACGGATTGCTGGATTTAAGTCTTGAATAGATCCCGGCACAATGTTTCTGTGATTCggtttgtaattcatttttatttaaaatgtttccacaGCATTACAACAGTCGTCTTAAATCtttaacattttagaaatatgaatttgtattttacctTGGGAAAGCTGCCAAACAGGTGAGCTCATCGTTGCACATACAAAAGCAACTTCAGGTTGATTTGACTGCTAGTGATTTATTGTGTGCTTTAGTATTCAAGCATTGTACTTTGGTTAGATGGAAATGACTTGGCTTCTGTGATAATCTGTCAAGAAGCCCATCAACGAGGCCGAGCACGAAGTGTAAGTAAACCATAAACGTTAAAAATATGAACTGTAACATTAGAAGGGAGTTTTTGTGATGTGTAAAAGTAAATTTGACCAATTCAATTATATAGTCCTGTCAACAGGTGGTGCAAATGAGGAGGCCAAGTAGGCATTTTTATATGGAAGGTCACAGgctcaaattattatttgtgcCTTACATGGCTCACTGTCTACCTGTTAGCCATTCAGCCCTGCAAGATGTTGGCTAGGATTAAATCATCACTTCAACCCACCTGAGTATGTCTCCATAAAAATCTAGTAGTTGGTTGTGGGTTTACAAGAGATAAAGGGAACGTGCTAGTGGAAGGGATGAAGAATCCGTCAAGGATCGGATttgtaatttgattatttttattattattattattttaaatctgagcCGATGTTAGATTTTTTTAGCTGGAACGGTGATTGTGAGAAGTACTAACTCCGTTCCCTGAAATGTATGTAGTTTTGGAACATCCACAAAAGCTTTCATAAGATAGCTAAATCTGAAGAATGCAACATTATAACAGTCATACATGTGCAGTTGTGCTCCAGTATAGAACTGTGAAATCAGCTCTGTACGTCTCTCTTCACAGGAACTGTGCCCGaataaactatacaaaacaaaagtattttgtcATTTCAGTCATTGTCTTTAAATAGAGGGCTATGCACTTTGTACCTTAATACATTCTGTCAGTGGAAAGATTAAACTATAGTTGGTAGAGTTACTTCCTTTTTT

Function

GO: NA

KEGG:

id description
K23220 LRIF1; ligand-dependent nuclear receptor-interacting factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58997 lncRNA upstream 23329 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA upstream 23329 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA upstream 23329 45851095 ~ 45854769 (+) False G47322
TU59015 lncRNA upstream 51446 45826312 ~ 45826652 (+) True G47336
TU59012 lncRNA upstream 54870 45818951 ~ 45823228 (+) True AMCG00013872
TU59087 lncRNA downstream 16554 45901867 ~ 45903185 (+) True G47383
TU59091 lncRNA downstream 20789 45906102 ~ 45906399 (+) True G47387
TU59094 lncRNA downstream 35827 45921140 ~ 45921898 (+) True G47390
TU59104 lncRNA downstream 58258 45943571 ~ 45947856 (+) False AMCG00013879
TU59322 lncRNA downstream 411320 46296633 ~ 46302869 (+) True G47546
AMCG00013870 mRNA upstream 1203 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013871 mRNA upstream 31962 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013872 mRNA upstream 56959 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013869 mRNA upstream 75287 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013873 mRNA upstream 79157 45793535 ~ 45798941 (+) True AMCG00013873
AMCG00013878 mRNA downstream 3982 45889295 ~ 45893895 (+) True AMCG00013878
AMCG00013881 mRNA downstream 9834 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013879 mRNA downstream 58399 45943712 ~ 45959194 (+) True AMCG00013879
AMCG00013880 mRNA downstream 90915 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013884 mRNA downstream 107900 45993213 ~ 46005467 (+) True AMCG00013884
TU59011 other upstream 60143 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 517216 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 782429 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2437400 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2788455 43087289 ~ 43089643 (+) True G46862
TU59106 other downstream 49346 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1184388 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2362754 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2368981 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2383441 48268754 ~ 48269272 (+) True G48018

Expression Profile