RNA id: AMCG00013869


Basic Information

Item Value
RNA id AMCG00013869
length 1497
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00013869
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45800918 ~ 45802811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGCCCAGCAGCTTCCTGAGCCAGACCGAAGACGAGGACACCGTGCTGGAGAAGCCCCTGGGGTACCTCACGCCCCTGCACGAGCTGGACAGTGGGCTGGGCTGCACCGACGGCAGCTTCCACCAGGGCGAGGTGTCCGGGATGGAGACGGAGGAGGGGGCGGAGGAACCTGGCTCCTCCCCGCTGGAGCTCACCAGCCGGGGGTCCCCCTCATCCGAGTCGCTCATCTCGTCAGAGCTCAGCGACTCCGGCTTCTACAGCGTCAGCACCGGGGAGTTCCGCCGCTTCCAGAGGCTTCTGGAGAAGAAGATCCGCCTCTACCGGGCCAAGATGGCCCCCCGGAGCCGGGGTGATGGTGGCGACAGGGAGCAGCTGGCTCTGAGGGATATCCTCAAGGCTCGCCGTGACCTCGAGTCCATCCCCGAGACCTTGACCTGTCAGCCTGTGAGCGGCTGGCCCGAGGAAGCCAGCCCCAGCAGCGTGGCTCGCAGGTGCATAATGGGCGTGTCGTCCGTGCAGTACAAGAAAGCCGAGAATCCCTGTCTGAGCAGGTACGGCTCCGGCACCAGCTCCCTGCTGTCCCCTAAAAGACCAGCTCTGACTAGCTCCCTGCTGTCCCCCTGCCGCTCCCCCTCCTGCCAGCAAAGGCACAAACAAGACTCTCTAGGCGACCTGCCGAGGAGGAGCTCCCAGCAGCTGTGCACCCGGAGCCCAGAGACCAGGAGAGCGAGACATTGCTCCATGCTGGAATACAGGACTCTCCCGGCTCTCCACCAGCATAGGAGACTGGGAGGGGACGATCCAATCACAAGGGGCGGGCTGGACTGTCCGAGTGGCTCCTGGCAGAGGGGCACAGCTGAACAGAATAGGGGCATCTTACCTGGGGACTGTTGTTCAGCCAGCGAGGGCAACAGAATGGGTGGAACCGAAAGTGGGGAGAAACCGGACAAGGTTGCCAGCAAGGGGGCTCCTGCCCGTGGTGAAAGGCGCTGCCAGACGTCCGAAATTCCAGGGTCCTGGCCAAAAACTGGCAAGAGCTCCGTTCTGGAAACAGGCCTCCAAGAGAGCGACCCTCCAACCCCGAGGAAGGGCGTGCCCAACCCCCGGGTCCTGAGGAACCAGTTGCTGAAGGCACGGGCGTCTCGGCTGGCGGACGAGCGCAGCGGGGTCACCACGGACGAGGAGACGCGCAGCGAGGCAAAGACAGGCCGCTACTGGAGCAAGACGGAGCGCAGGAGGCATGTGCTGACTGCCCGGGAGCAGCGGCAGCGGCGCATGACCAGGGTCCCGACTTGGGAGGGCGGCCGCAGAAAGGAGGCCTCCAGCACCGTCCTGGAGCTGAGCCACAGGAAGCTGTCACGCCTGCGCAACAGGAAGGTGCTGGACAGCTGGACCACCATCGAGGAGCTGTTGACGCACGGCACCAAGACTGCCTCCGGGAGCTGCGAGATCCTGTGCCCTAGTCCGCTGCTCTCAGTCACCACCGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58990 lncRNA upstream 495 45782026 ~ 45800423 (+) False G47320
TU58992 lncRNA upstream 495 45782026 ~ 45800423 (+) True G47320
TU58994 lncRNA upstream 9814 45782026 ~ 45791104 (+) False G47320
TU58933 lncRNA upstream 159281 45639864 ~ 45641637 (+) True G47264
TU58928 lncRNA upstream 176347 45624372 ~ 45624571 (+) True G47262
TU59012 lncRNA downstream 16140 45818951 ~ 45823228 (+) True AMCG00013872
TU59015 lncRNA downstream 23501 45826312 ~ 45826652 (+) True G47336
TU58997 lncRNA downstream 48284 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA downstream 48284 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA downstream 48284 45851095 ~ 45854769 (+) False G47322
AMCG00013873 mRNA upstream 1977 45793535 ~ 45798941 (+) True AMCG00013873
AMCG00013863 mRNA upstream 60376 45720220 ~ 45740542 (+) True AMCG00013863
AMCG00013862 mRNA upstream 105890 45682080 ~ 45695028 (+) True AMCG00013862
AMCG00013852 mRNA upstream 144546 45653353 ~ 45656372 (+) True AMCG00013852
AMCG00013855 mRNA upstream 164349 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013872 mRNA downstream 13842 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013871 mRNA downstream 31010 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013870 mRNA downstream 52641 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013868 mRNA downstream 75287 45878098 ~ 45885313 (+) True AMCG00013868
AMCG00013878 mRNA downstream 86484 45889295 ~ 45893895 (+) True AMCG00013878
TU58857 other upstream 440036 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 705249 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2360220 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2711275 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2756482 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 13561 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 131848 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1266890 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2445256 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2451483 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile