RNA id: AMCG00013873



Basic Information


Item Value
RNA id AMCG00013873
length 708
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00013873
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45793535 ~ 45798941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTCCGGACACGGCACAGCATGAGCTGCCCTCTGCCGCCCCGACTCCCTCCCTCGCTCGCATATGGGCTCTGCTGGGCTTTCACAACGCATTACCCCGGCCCTCGTGTCTCCACGCCCCGGCCTGCACCGCAGCTGGCCCGGCTCGGCAGCAGGCGGAGGCGCAAATGCGATTCCCCACGCATGAGCGGGCTCTTCCGCGCCTAACGAGCCTCGCTAGCCTCAGCCAAACCCCTCCCGATGTGGCTTCATCTCGGACACGGTGCCGACAAGCAGCATGGCTTTCAAACACTGGCGGAACAGCGAGGGGCTGCGGGAGTCACCGAGGGTCAGAAAGGCTCCCGAGGGCCTCACTCGACTGCCGCGGGGTGGCAGCCAATGAAATGGCAGGTTGgtaccagcaccagcaccagcaccagcactgGCTGAGGGTGGCCATGGGCTGTCGGCTGTCCGGGTTGTGGCTGGACGACGGTCTGGAGGTGAATGGGCGGGACCTGTCCCACGTCAGCCAGCAGGAGGTCCTGCAGATCCTGGGGGGCTACGAGGAGCCCATCACCCTGCAGATCGACAGCAGGAAGTCCCGCGCTCAGAGGAGGCAGGTGTCCGACTGCGGCACCCAGACCGAGCGGCCCTGGGACACGCTGAGGGGCCTGGGGGTCACAGTGGGGTCATCGCCCCGGCTCAGCTCCTACAGTGACAGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58994 lncRNA upstream 2431 45782026 ~ 45791104 (+) False G47320
TU58933 lncRNA upstream 151898 45639864 ~ 45641637 (+) True G47264
TU58928 lncRNA upstream 168964 45624372 ~ 45624571 (+) True G47262
TU58924 lncRNA upstream 170729 45622587 ~ 45622806 (+) True G47258
TU58917 lncRNA upstream 173303 45616133 ~ 45620232 (+) False G47255
TU59012 lncRNA downstream 20010 45818951 ~ 45823228 (+) True AMCG00013872
TU59015 lncRNA downstream 27371 45826312 ~ 45826652 (+) True G47336
TU58997 lncRNA downstream 52154 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA downstream 52154 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA downstream 52154 45851095 ~ 45854769 (+) False G47322
AMCG00013863 mRNA upstream 52993 45720220 ~ 45740542 (+) True AMCG00013863
AMCG00013862 mRNA upstream 98507 45682080 ~ 45695028 (+) True AMCG00013862
AMCG00013852 mRNA upstream 137163 45653353 ~ 45656372 (+) True AMCG00013852
AMCG00013855 mRNA upstream 156966 45635112 ~ 45636569 (+) True AMCG00013855
AMCG00013853 mRNA upstream 160059 45628387 ~ 45633476 (+) True AMCG00013853
AMCG00013869 mRNA downstream 1977 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013872 mRNA downstream 17712 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013871 mRNA downstream 34880 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013870 mRNA downstream 56511 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013868 mRNA downstream 79157 45878098 ~ 45885313 (+) True AMCG00013868
TU58857 other upstream 432653 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 697866 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2352837 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2703892 43087289 ~ 43089643 (+) True G46862
TU58393 other upstream 2749099 43039984 ~ 43044436 (+) True G46840
TU59011 other downstream 17431 45816372 ~ 45817955 (+) False AMCG00013872
TU59106 other downstream 135718 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1270760 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2449126 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2455353 48254294 ~ 48255821 (+) False AMCG00013961

Expression Profile