RNA id: AMCG00013874


Basic Information

Item Value
RNA id AMCG00013874
length 2893
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00013874
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45807005 ~ 45816694 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCATGGCAGAAGAAGAGCGCAACTCTCTCAGTCTTAAGATAGCTGCAATTCCTGAGCTTTTTCTATGTTTATTCGATTTCCCTCTTTACAATGAGGCATCGGAAACATCCTCTCCTCGCCCGGGGGTCCTTCATCGTAGCAAGGCGCCAGTCgctggtgtttattttttgatggCTGAAGGATAATAAAAGAATAAACGGCTcggttattatttattgtttctatttatttgagCGCTGAACGTCACCAGTGGTTGGTCTCCGGCAGCTGAAGATGAACCTAGAACTGCTTGAGTCCTTCGGGCAGAATTACCCAGAGGAGGCCGATGGCACCCTGGACTGCATCAGCATGGCGCTTACTTGCACCTTCAACCGTTGGGGCACCCTGCTGGCGGTGGGCTGCAACGACGGGAGGATTGTCATCTGGGACTTCCTCACCCGGGGTATCGCCAAAATCATCAGCGCTCACATCCACCCCGTGTGCTCGCTGTGCTGGAGTCGAGATGGACACAAGCTGGTCAGCGCGTCCACGGACAACATTGTCTCCCTGTGGGACGTCCTGACCGGGGACTGTGACCAACGCTTCCGGTTCCCCTCCCCCATCCTCAAAGTGCAGTTCCATCCCCGGGACCAGAACAAAGTGCTGGTGTGCCCAATGAAGTCGGCGCCGGTCCTGCTCACCCTGTCCGACTCCAAACACGTCGTGCTGCCCGTGGATGACGACTCGGACCTCAACGTGGTGGCAGCTTTCGATCGGCGCGGCGAATACATCTACACCGGCAACGCCAAGGGGAAGATCCTGGTGTTGAAGACGGACACGCAGGACTTGGTGGCTTCGTTTCGAGTGACCACAGGAACCAGCAACACCACTGCCATCAAATCCATAGAGTTCGCACGGAAGGGCAGCTGTTTCCTGATCAACACGGCAGACCGCATCATCCGCGTGTACGACGGCCGGGAGATCCTGACATGTGGCCGGGACGGCGAGCCGGAGCCCATGCAGAAACTGCAGGACCTGGTGAACAGGACGCCCTGGAAGAAGTGCTGCTTCTCCGGGGACGGGGAGTACATCGTGGCCGGGTCCGCCCGCCAGCACGCCCTCTACATCTGGGAGAAGAGCATCGGCAACCTGGTGAAGATCCTGCACGGCACGCGCGGGGAGCTTCTGCTGGACGTGGCGTGGCACCCGGTGCGGCCCATCATCGCCTCCATCTCCAGCGGCGTGGTGTCCATCTGGGCGCAGAATCAGGTGGAAAACTGGAGCGCCTTCGCCCCCGACTTCAAAGAGCTGGATGAGAACGTGGAATATGAGGAGAGGGAGTCGGAGTTCGACATCGAGGACGAGGACAAGAGCGAGCCGGAACAGACAGGTGCTGATGCCGCGGAGGACGAGGAGGTAGACGTCACCTCGGTTGACCCCATCGTGGCGTTCTGCAGCAGCGACGAGGAGCTGGAGGACTACAAGGCCCTGCTGTACCTCCCCATCGCCCCCGAGGTGGAGGACCCTGAGGAGAACCCCTTCGGCCCCCCGCCGGACGCGGCTGGCCAGACGATCGCCTCTGAGGAGCCCTCCACCGGCATGGGGGGCGGCAACGACAAGAAGCAGCGGCAGCCCTCCGCCGAGGGGGCTCCCCCCAAGAAGAAGGCCCGGACCACCAACATTGAGCTGCACGGCGTCCCAAGCGACGaagTGCATCCGTTGCTGGGCGTGAAGGGAGACGGCAAGTCTAAGAAGAAGACGGCGGGTCGGCCGAAGGGATCGAAAGGTAAAGAGAAAGATTCTCCCTTTAAAGCCAAAATCTACAAGGGGGACAGAGGGTTACCTTTGGAAGGAGGAGTGAAGGGCAAAGTGCAGGCAGATATTGGACAGCCCAAGACAGGCAACCTGGTGCAGTCCCAGTACAAGCAGCACGAAGCGCAGGGATTGGACTGAACCACTGGGCACCGCAAGAGAGCCCCGGGCTGGAGGGGCGGATGGACTCGGCGTCACACAGACTCCTCTCCTGCGCGGGCCGGAGTCGTTCCCGGCTCCAGACTctccagtttttaatttttgccTCCCCCACCCCGCCCCTCTAAGACTGGATAAGAACGGCCTGTTTCCGATTGGCGGCCCCCGAGACACAAACGGTGGTTTACTGTGTGTTCTGAACCCGGTGTTCCCGGGTCAAGGGGGTCATCGGCCTGTCGACGGAGACGCTGGCGATGCATTTTTAACCCGCGGTCGGAGCGCTGCGTGCCGTCGCAGTGTTGGGGGGATTTTCAGATCATGATTTGCAAAGAtgaaccttttttctttcctctgtctttttttcttgtacctCATGATTCTAACCTGATCGGCCTGAACTGAAAGTGGAAGTGATCAGGGCGATGGACTGTTCAGATGCAACAACTCTGACTGGTTTCAGACAAGGTGGAGGATATTTGATggtcttcaaaaacaaacattgtacgATATTGTAAGACCATGAGGTCCAAATATAACTCTTTTTATCATTTTGGACATTTTACTTCCATTTTGGAGtgtttctttctatattttttttatagaaacagTTGCTGTGTACTTTGTATGTTGTCTGTATGTAAATACCTGATTTCTTTTCGGAGTAaacctttcatttgttttacggATGTATTGGTTTCATCATGAACTTCCAGCACTGGCagattttcaaatgcaaataaaaacaataaataaagagtaGGAACACAGtgatgcgcacacacacacagacaaggtgCATCTGGCACGGGGGCCGTGGAGCACACGGGTACTACACTGAAGTCAACATGCCTAAACCATTGCTTTTACACCTGACCCCACTAGATGGCGGCATTACATCAAATCTTACCTTTAATCTTAATGGCCAGAGAGACAGTTCAGAAC

Function

GO: NA

KEGG:

id description
K14961 RBBP5, SWD1, CPS50; COMPASS component SWD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58925 lncRNA downstream 184250 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 462990 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 538609 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 702118 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 840077 44966010 ~ 44966928 (-) True G47168
TU59047 lncRNA upstream 9029 45825723 ~ 45826654 (-) True G47358
TU59048 lncRNA upstream 11271 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 29155 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 104412 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA upstream 104412 45921106 ~ 45922870 (-) False G47391
AMCG00013875 mRNA downstream 672 45805431 ~ 45806333 (-) True AMCG00013875
AMCG00013865 mRNA downstream 22181 45783866 ~ 45784824 (-) True AMCG00013865
AMCG00013866 mRNA downstream 54417 45743779 ~ 45752588 (-) True AMCG00013866
AMCG00013867 mRNA downstream 94426 45712091 ~ 45712579 (-) True AMCG00013867
AMCG00013864 mRNA downstream 104232 45695635 ~ 45702773 (-) True AMCG00013864
AMCG00013877 mRNA upstream 6423 45823117 ~ 45831441 (-) True AMCG00013877
AMCG00013876 mRNA upstream 40772 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013882 mRNA upstream 102942 45919636 ~ 45928309 (-) True AMCG00013882
AMCG00013883 mRNA upstream 145496 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013887 mRNA upstream 162412 45979106 ~ 45991807 (-) True AMCG00013887
TU58927 other downstream 183110 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3105937 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5198477 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5219613 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5378380 40386061 ~ 40428625 (-) True AMCG00013730
TU59115 other upstream 107228 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 147197 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 258735 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 343845 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 1055175 46871869 ~ 46875370 (-) True G47666

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040883 True 1999 mRNA 0.54 14 NC_007133.7 770001 ~ 784110 (-)
grasscarp (Ctenopharyngodon idella) CI01000186_00272056_00278805.mRNA True 2311 mRNA 0.53 12 CI01000186 271668 ~ 279177 (+)