RNA id: AMCG00013877


Basic Information

Item Value
RNA id AMCG00013877
length 534
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00013877
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45823117 ~ 45831441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTCTATGTCATCCTCAGTAGGGCGCCCGCAGACCGCGCCCTCTGATTGGTCCGCCGGGGCCCACGTGGTGCTGCCGGAGTCACGTTTATGCGGCGTGGCGCGACACGGCCGCTCGGGGCGCGCGGACCCGGCCTCAGGTCCGGTGAGGCACCGCGATGTCCGGACCACCGGTTTGGGGGATGTTTTTGCGCCCTACATGGATCTTGCAGTAAAAGTTTTGCAGTATTCCGACACCGAGACCGTGAGGCTGCAGCTCTGGGACATCTCCGGTTATGAGCGTTCCACCCCTATGACCCGGCTGTACTACAGAGAAGCTGCCAGCTGCATCATCAAGTTCGATGTCACAAACCCCTCCACCTTTCACAACTGCCTGATCTGGAAATGGGATATGGACAACGGGGCCATGCTCTTGGATGGCAGGCCTGTGCCCTGCATCTTGCTGGCCAACAAAACAATTCAAGAGCAGAGCCTCTGCCGCGAGTTATTGTTAGACTGGCCGAGCTCTGCTCTGCTCCTCTGGGTGCTCTGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58925 lncRNA downstream 200362 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 479102 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 554721 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 718230 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 856189 44966010 ~ 44966928 (-) True G47168
TU59058 lncRNA upstream 14408 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 89665 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA upstream 89665 45921106 ~ 45922870 (-) False G47391
TU59313 lncRNA upstream 399884 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 467720 46299161 ~ 46302700 (-) True AMCG00013903
AMCG00013874 mRNA downstream 6423 45807005 ~ 45816694 (-) True AMCG00013874
AMCG00013875 mRNA downstream 16784 45805431 ~ 45806333 (-) True AMCG00013875
AMCG00013865 mRNA downstream 38293 45783866 ~ 45784824 (-) True AMCG00013865
AMCG00013866 mRNA downstream 70529 45743779 ~ 45752588 (-) True AMCG00013866
AMCG00013867 mRNA downstream 110538 45712091 ~ 45712579 (-) True AMCG00013867
AMCG00013876 mRNA upstream 26025 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013882 mRNA upstream 88195 45919636 ~ 45928309 (-) True AMCG00013882
AMCG00013883 mRNA upstream 130749 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013887 mRNA upstream 147665 45979106 ~ 45991807 (-) True AMCG00013887
AMCG00013886 mRNA upstream 177663 46009104 ~ 46023024 (-) True AMCG00013886
TU58927 other downstream 199222 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3122049 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5214589 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5235725 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5394492 40386061 ~ 40428625 (-) True AMCG00013730
TU59115 other upstream 92481 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 132450 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 243988 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 329098 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 1040428 46871869 ~ 46875370 (-) True G47666

Expression Profile