RNA id: AMCG00013878


Basic Information

Item Value
RNA id AMCG00013878
length 2340
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00013878
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45889295 ~ 45893895 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGCTGTTAGACTGCCGAATGGGGGATTTCACGTGTGCAAGcgcagaataaaacaaatctccacTTCTGTGTCAAACATGTGGCGATTCACGTTTATAATGCAGTTGATTTGAAAACAAGACCTGTTTCTAACGAGTGTAGCACCAGCCTGCGTGTTTTAATAAGAAAACATGAGCAGAAGCAGGGGATATCCAGTTGGCTTCAGGAACCTGAGGGACCTCCCTGAAACCCGTTAAAGTTGTGGTGAAGCCACCCGCACGTCACTGTACAGTCCACCGCCTGACTTCTGGGACCAGCGGGCAGAGGACACCACCACTCAGGATGTGTTCCCATAAGGCAGGCAGACTCCCGGGCTGTAGCGCTTCCACAGACCCTCCCGGCACTTCGATCAACATAGGCGGGAAAAACGTGTCCGTCCGCGAAATGGAGATTCAGATCCCAGCCGGGGCGGATGTGAGAACCGTTTCTGTCAAATTTCTCCCTCCTTCGTTCCTGAGTAAAATGGGCCTCCCCTGGCCTGCGAAGCTGAGGGAAGTGGACGTCTCGGACCAGTTGTTGGCGTTCTGCATTTCTCCGGTCTACACCCTGGAAGCAAAAGACAGTGCCTTTTCCCCGGGAGTTGCCTCTACCGGATCCAAGTGTGCAAATTCAGACCCGGGTGgcggtggtgggggtgggggcgaGAGCATTGAACTGAACAAATGCTGGCTTCCTATCAAGTCCTCCAGCTTCGCGGCTTTCAAAGTCCTGCAGAAGTTCATGGAGAGCCCCCAGTCTGCGACCGTGAGCGTACTCAAGGAAGTCCTGAAGAGGTGCGGCGTGGCTTCCACTCCCCAGGAAGACACTTTCCATGTCGGGCAGGACACTCTCATCCTCTACAGCGGCAGGGTCTACCTGTTCATCAATGAGGTGAGAGCGGGAGGGAAGAAGCTGGGCCCGAGAAGCCAAGAGCAGGGCTGGCGCTCCCCCTGTCCCCCTGTGGCGCAGCCTGTGGCCCAATGGGAGAAAAGGGCCTCACCTTCCCAGACCTGCCAGACCCAGCCAGTCTCCAAACAGGCCTCTACAGCCGACTCTCCCCGGTCCGAGCAGGTCCGGTCTGCTGTCCCTAGCCTCGATGTCAGGGCACAACGGCACAAATTTGGAATTACCCGGAAACTGAGTGTCAATCTGATGAGGCTCTCCGTCGAAGCCTGCCGGGAGTCATCGAAGAGACCGCACAATGCCACGGAGACGCAGGCCGCCGCGGACACACCTTGCTCGGAGGAAACTCGGACCCGCGGTGAAAAGAGCAGAGACATCCTCCCAGAATCCTCCCCCGCTGGGCAGAAGAACCGCGATGGGGAGCGACCTGCATCGGGCGGAGATGCTTTTGAACTGGTGGCAACTGAAGAGGCCACTGACGAACCCGCAGCTAAGAAATCAAAAGTGGACTCGGCCAGTGGCCCGTCTGACTCTCCGGACGCCGAGCCCCAGATCGAGGAGAGCCAATCTTCAGAGGAGGGAGGATGCGGGTCTCAGGGCAGCGGAGAGGAGCCCCTCTTCCTGGCGGACCACGCAGGGTTTGATTTTGACCTGTCCTTACGGGAAGAGAAGATTGGCCGGATTAAAGCTCTCCTCAGGGAGAAAGAGGCGGAGCTGACCAAATTCAGGCAGTCAGCTGGCCAGTGAAGGTCCGGCCCCCTGCGGCCGGTATAGAAAACACCTGACAAAGTAAACGAAGCAGTTCTTTCTTTGTTGTACAAGTTTGTCTTTGTAACCTTGCAGGAAGTGTATCGTTAATGGAAAGTACATGTTGGTACCAAGTTCTTTAACCCCTTGCGTGACACGTTGTCAATACGGATTACCTTAATGAGGTACAAAAGCCCTCTGAATGCTTTCTGTAAAGTTTAGTAAGTGTTGTGATTCAGTGGTGGGATTGTTCATGAATTCGGtcattgtttgatttattttctgttacaatACGCACAACACTGTGAGCTTGAATGTTGCGGAGTTctgtttttaagtgtattaaGTTATTTCCAAgtcttatttttcaataaacttGTTCTGTAGCATCGCACAGACAATGCCTACTGTCAGAGTATATGTTTTTCGTATTGCTCTACCAACAATATTGATCTGTATACCGTGGAACGTTTCATCCACCAAAGACAGCACACGCTTCTAGGGGGATAGAAAGATGATAAGGAGGAAGAGTGAAGGGGAACTTCATGTAACACGCAGTTCTGCAAAGCGAGGCTTTTTGTTTCTGGACTGCAACAGAGGCCTGTCTGTGCAAGTGTCGGAGATGGCAGCTCAAAGTGTCTCCTGGTTGTCTTCGGAGCGTCGCCGACTG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58997 lncRNA upstream 34526 45851095 ~ 45854769 (+) True G47322
TU58998 lncRNA upstream 34526 45851095 ~ 45854769 (+) False G47322
TU58999 lncRNA upstream 34526 45851095 ~ 45854769 (+) False G47322
TU59015 lncRNA upstream 62643 45826312 ~ 45826652 (+) True G47336
TU59012 lncRNA upstream 66067 45818951 ~ 45823228 (+) True AMCG00013872
TU59087 lncRNA downstream 7972 45901867 ~ 45903185 (+) True G47383
TU59091 lncRNA downstream 12207 45906102 ~ 45906399 (+) True G47387
TU59094 lncRNA downstream 27245 45921140 ~ 45921898 (+) True G47390
TU59104 lncRNA downstream 49676 45943571 ~ 45947856 (+) False AMCG00013879
TU59322 lncRNA downstream 402738 46296633 ~ 46302869 (+) True G47546
AMCG00013868 mRNA upstream 3982 45878098 ~ 45885313 (+) True AMCG00013868
AMCG00013870 mRNA upstream 12400 45855452 ~ 45876895 (+) True AMCG00013870
AMCG00013871 mRNA upstream 43159 45833821 ~ 45846136 (+) True AMCG00013871
AMCG00013872 mRNA upstream 68156 45816653 ~ 45821139 (+) False AMCG00013872
AMCG00013869 mRNA upstream 86484 45800918 ~ 45802811 (+) True AMCG00013869
AMCG00013881 mRNA downstream 1252 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013879 mRNA downstream 49817 45943712 ~ 45959194 (+) True AMCG00013879
AMCG00013880 mRNA downstream 82333 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013884 mRNA downstream 99318 45993213 ~ 46005467 (+) True AMCG00013884
AMCG00013885 mRNA downstream 143498 46037393 ~ 46047122 (+) True AMCG00013885
TU59011 other upstream 71340 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 528413 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 793626 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2448597 43438492 ~ 43440698 (+) True G46945
TU58419 other upstream 2799652 43087289 ~ 43089643 (+) True G46862
TU59106 other downstream 40764 45934659 ~ 45941906 (+) True G47398
TU59522 other downstream 1175806 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2354172 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2360399 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2374859 48268754 ~ 48269272 (+) True G48018

Expression Profile