RNA id: AMCG00013885



Basic Information


Item Value
RNA id AMCG00013885
length 2325
RNA type mRNA
GC content 0.54
exon number 15
gene id AMCG00013885
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46037393 ~ 46047122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCAGCTTGCCTTCCTCTTTCTCGTGTATCTGCAAGATGAACAGAGTGCTACTGACTGAGTGTGTTGCTCTTCTCtgaaacacacccacacactagAGCAGGACAATAAGCACTATCCCGGACAGACAGCTTTTTCTGATATTGTCCCAGTTGCATGCTGTGTGGACCTGGACTTTCTGACGAGTGAGGATGGACGACTCCTGGAATCGCATGAGCGTGTTCGATATGGTCTCCAAATTTGAGGTTTGCAGCAGGACTATGACTGATGGCGAGAGGTCTGTGCCTCCTGGGGAGATGGGaaggagggcagagaggctcaAGGAGGTGCCAGAACAGGCTAATGGCGACACGGGGCAAGAGCTGGAAGAACAAAGCCAGGGGGCAGCGGGCGGCCCTCATACCAAATGGAGGGGTCTGCATACTTTCCGCAGAGTCACCTCGAGGAAGCTAATCCAGAGGCCTTCTTCTCCCATCCTGAATGAAGAAGCCCaggcagagaaaaataaagcaagtcCATCCATTTGTCCGATTGACTGCACCCTGACCGACCTGCTCCTCCTTTCACAGGAGACCAACGAGGAAAAGATCTTCAAGATCGCCAACGAGCTCTTGGAGACGGAGAAGGCCTATGTCAGCCGACTGTATTTACTTGACCAGGTCTTTTTCAAGGAGCTTCTGACCGAAGCCAGGGCTGCGAGCTCGTTCCCCGAAGATGTCGTGAAGCAGATCTTCTCCAACCTCTCCTCTGTGTACCAGTTCCACAGCCTGTTTCTCCTGCCCGAGCTGCAGCGCCGCATGGATGAGTGGGGTACAAACCCCCGGATCGGAGACGTGCTACAGAAGGTGGCCCCATTCCTGAAGATGTACGGCGAGTACGTCAAGTGTTTCGACAAGGCCATGGACCTCATCAACACCTGGATGGAGAAGAGCCCCCGCTTTGATGAGATTGTCAAGGACATCCAGAAGCGGGAGATCTGTGGGAACCTGACCCTGCAGCACCACATGCTGGAGCCAGAGCGTCTGGAGAAGCTGTGGGAGGTGTACGAGATGCTGAGCATGGACGAAGAGATGGTGGACCCCTCCAACAAGCTGCTCCGAGAGGGACCCATCCAGAAGATCTCCGAGCGCAGGAAGAAGGAAAGACACCTCTTCTTGtttaaCAACATGCTGCTCTACTGTGTTCCCAAGTTCAGTCTGGTGGGGCCCAAGTACATCATCCGGTTACGCCTGGACATGGAAGGCATGAAGGTGAAGGAGCTGAACGATGTGGAGTTCCCCCACTCCTTCCTGATCTCGGGTACGTCTCGCACGCTGGAGCTGCAGGCCAGGTCTCAGGCAGACATGGAGACCTGGATTGAGGCTTGCCGGCAGGCGATCGACCAGAACGAGAAGAAGACAGAGAGTTTCAAGAGTGCCAGCAGCAGCCTGGTCCCTGACTTGCAGCCAGTCACGGTGGAGAGGCAGGAGCTGGGGAAACGAGCCCCCCAGTGGATCCGGGATGGTCTGGTGTCCATGTGCATGCGCTGCGGGGAGCCCTTCAACGCCATCATCCGGCGCAGACACCATTGCCGAGCCTGCGGATATGTCGTGTGCCACAAGTGCTCCGACTACAAGGCGGCCCTGCAGTACGATGAGAACAAGCTGAACCGCGTGTGCCGAGACTGCTACGGCATCCTGGGGGGGCAGATGGACAGCCGAGAGAAGGAGGACAAGAAGAGGGGCATACTGGAGAAAGAGGCTGGTGAGGTGTCTGAGCGCAGCCTGATGTGCAGCTTCCTGACCTTGATGGACAAGCAGGGGAAGGGTGGGACCAGGGGCTGGTTCGTCATCCCCAAAGACGAGCCTCTGGTCCTGTATATGTATGCAGCACCACAGgatgTAAGAGCTCAGACCACCATCCCATTGCTAGGATATCAGGTGAAGCAGTTGGCGGCCGATAACAAATGCACCTTCCAGCTCAGCCAATCCAAGCTAGTCTACACTTTTCTGGCCGAGTCGGAGGAGCAGAGAGACCGATGGGTGGAGGTTATCAATCAGGTGGCCAGTGGGGAGGAGCCCTGGCTGGAAGAAGACTGACTGACTTCCTGTTCAGTTACAGGAAGCTTGTTGGGAGTGACTGCTCACTAGACCAGATGGTGAATGCGTCTTTGTGGGCCATTGTTCATTGCTGACATTTATCTGTATCTATAAGGCAGAACTGTACATTTCCCTTGAGGACTGTAAAATGATTGTATATGATTGTAAGAGCAATtgatttatagttttatttgaaacaacCAATCTGCATTATAATCTTTCTTCGTGGCAATAAAGGGTGAAAGGAG

Function


GO: NA

KEGG:

id description
K05721 FGD2; FYVE, RhoGEF and PH domain containing 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59104 lncRNA upstream 89537 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 115495 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 130994 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 134208 45901867 ~ 45903185 (+) True G47383
TU58999 lncRNA upstream 182624 45851095 ~ 45854769 (+) False G47322
TU59322 lncRNA downstream 249511 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 372010 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 883345 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 922616 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 928394 46975516 ~ 46976186 (+) True G47684
AMCG00013884 mRNA upstream 31926 45993213 ~ 46005467 (+) True AMCG00013884
AMCG00013880 mRNA upstream 58749 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013879 mRNA upstream 78199 45943712 ~ 45959194 (+) True AMCG00013879
AMCG00013881 mRNA upstream 135812 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013878 mRNA upstream 143498 45889295 ~ 45893895 (+) True AMCG00013878
AMCG00013895 mRNA downstream 56866 46103988 ~ 46123681 (+) True AMCG00013895
AMCG00013894 mRNA downstream 86504 46133626 ~ 46144604 (+) True AMCG00013894
AMCG00013892 mRNA downstream 103461 46150583 ~ 46155607 (+) True AMCG00013892
AMCG00013896 mRNA downstream 109302 46156424 ~ 46160416 (+) True AMCG00013896
AMCG00013897 mRNA downstream 113506 46160628 ~ 46163499 (+) True AMCG00013897
TU59106 other upstream 95487 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 219438 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 676511 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 941724 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2596695 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 1022579 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2200945 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2207172 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2221632 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 2233941 48281063 ~ 48351285 (+) True G48026

Expression Profile