RNA id: AMCG00013891


Basic Information

Item Value
RNA id AMCG00013891
length 696
RNA type mRNA
GC content 0.66
exon number 1
gene id AMCG00013891
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46087083 ~ 46087778 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAGCAGCTTCTCGCACGCCTTGATGGAGCGCAGGCCCAGCATGGTGCCGGGCAGCTGTGTGCCGTATGGGATAGCACCTCCTAGTGGTCACACACACTCGGATCACctgcaccaccaccaccaccacccccatcACCACCACCGCTGCCACCCCGGTGGCGGGCATGGCGACACCCTGGCGCACATGCCGTTCCTGCTGTACCCCACCAACGTGGACCCGGGCTACTACGAGGCCTCGTATAGCGGGGCCCTGTTCCCCTACATGCCCTTCCACGGGCACTTTGGCCTGTACGACTGCCCCTTCGAGCCCGCCTTCATCCAGAAGCGTAACGAGCGGGAGCGCCAGAGGGTGAAGTGCGTCAACGAGGGCTACGCCCGTCTGCGGGACCACCTGCCGGGCGCCGTGTCCGAGAAGCGCCTGAGCAAAGTGGAGACTCTGCGCGCCGCCATCCGCTACATCAAGTACCTGCAGGAGATGGTCACCAGGGGGCCCCCGGGGGCCACGGAGGCAGAGGAGAGGGTCAGCAAGGGCCCCAAAAGCGCTACCCTCAGCCCAGCCGAGGCAGGCCTCAATCGGGACTGCAACAGCGATGGCGAGTCCCAGaactcttcctcttcctctgcctcctcctcctcctcctcctcctcttccgcTTCCCCCTACTGCGAGTCGGAGGAGTCGCTGGGCTAG

Function

GO: NA

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59095 lncRNA downstream 164169 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 164213 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 232283 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 258832 45827965 ~ 45828251 (-) True G47359
TU59047 lncRNA downstream 260429 45825723 ~ 45826654 (-) True G47358
TU59313 lncRNA upstream 143547 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 211383 46299161 ~ 46302700 (-) True AMCG00013903
TU59468 lncRNA upstream 715833 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 969761 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 983565 47071343 ~ 47075028 (-) True G47717
AMCG00013890 mRNA downstream 3769 46075764 ~ 46083314 (-) False AMCG00013890
AMCG00013888 mRNA downstream 12655 46050593 ~ 46074428 (-) True AMCG00013888
AMCG00013889 mRNA downstream 48202 46028415 ~ 46038881 (-) True AMCG00013889
AMCG00013886 mRNA downstream 64059 46009104 ~ 46023024 (-) True AMCG00013886
AMCG00013887 mRNA downstream 95276 45979106 ~ 45991807 (-) True AMCG00013887
AMCG00013898 mRNA upstream 6762 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013903 mRNA upstream 214748 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013905 mRNA upstream 296904 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013908 mRNA upstream 300376 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013907 mRNA upstream 317046 46404824 ~ 46406931 (-) True AMCG00013907
TU59204 other downstream 3541 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 112772 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 162735 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 463188 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3386015 42699506 ~ 42701068 (-) True G46742
TU59251 other upstream 72761 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 784091 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 1110565 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1777072 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1879647 47967425 ~ 47974915 (-) True G47896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00190672_00191178.mRNA True 1205 mRNA 0.48 1 CI01000186 190154 ~ 191358 (+)