RNA id: AMCG00013893


Basic Information

Item Value
RNA id AMCG00013893
length 2101
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00013893
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46165651 ~ 46176881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCGCTCCGCAGGGACCCCTGTAGCTCCGCGGAGAGAGATGTCCCGAGACAGACAGCGTAGGAACCAGCGCTCCCACTCCCTGTCCTCCCTGCCCCCATCCTGGGACCCCCAGGCCGACTGGACACCGGACTGCGACCCCCACTCCCCCACACAGGGGCGCATGGACGGGCAGAGACTTGGGACCAAGGGCCCCAAAGACGCCCCGCCACCCAGCAAGGAGGAGCTGAAGCAACAACAGAGTGAACTGGAGGCCTGTCTCTTCAGGGTGACCGCAGGGGGTGTGCAGAGTCCTGACCCAGCCCAAGAGCCGCCGCTCAGCAGAATGGCTGATCAGGCCCCCAGCCCCATGGCCCTGCTGAGGTCCAATGAATCTGTAGACCGACAGGGAGACAGTGAGGACAGCATGGAGGAGCCAGTGTCCGAGATCGTGCTATCAACCTCCTGGGATGACCTCTCAATCCTGGAGCGTCTCGGACTCAACAGtaCGCAGCTCACAGAAGAGGAGGTGGAGTCTGCCTTTGCCCAGCTGTCCCTGGCCTTCCGCTGTGACCAGTACACCCTGAAGCGACGGCTACAGGCAGAGGAGAGAGCCAGAGACGTGGCCGAGGAGAACATCCATCAAGAGCTGGATAACGGCCGCACCACCCTGGagGCTCTGAAGACCCTCTGCGTGGACAGCAAGCGCAGCAAGATCCTGCACAAGCTGGAGCAGAGCCTGGACATCCTGAGCAGCACGGTGGAGCGCATCTCCAACACGGCCGAAGTGTTGGGCGCTGTGCACCAGGAGGCGCGAGTGAGCCGCGCCGTGGAGCTCATGGTCGTCCACGTGGAGAACCTGAAGCGCCGCCACGCCAGAGACCATGCCGAGCTGGAGGAGACCAAGAGGATGGTGCAGAGGAACTCCCGCAACCGGCAGCTCAGTGAGACACGAGACGAAGGTGACCTGAGGCCCAAAATCTACCTGAGGACATCCCAGCAGCACAGTGCGCGCCGGAGGGTCAGCATCGCTGTCATCCCCAAGCAGACCCAGAACGGGAAAGGCAGCACGGAGACAGATGCGCTGTGGACCGCGGGGGACAATGCACGGCCCAGTGTCAGGCAACCTGCATTCTCCAAGGACGATTCTGCGGACAGCAGTAACCCCCAGGGGCTGTGCGACCCCACGCCCCTCCTCGCAGTGGGATGCCCCGCGGACAGCCCAGATGAGAAGGAGGACTCGGTATACTTCGGCAGcccAGCCCAGGACAGTCTGCGCCGGCGGGGGCGGAGCCGGGGAGCACCGCAGGTGGGGAAAGCAGATGAAAGGGAGTCAGACGAGGAGTTCAGCGACTGCGACAACTTCACCATGGACACGTGTGCCCTCTCATCCGAGGAGCGCCCCCTGCTGCCCTGGCTGTGGCAGTGCCGTTGGTTCCTGCTTTGGCTGCTCCTCATGGGGTTGTCCTGCACTCTGCTGGTGGGCATCCTGCTGTGGCGGCTGCGAATCTTCAGCTACTGGGCGTGATGCTTCAGCTCTCACTGGACACACACGCACCCGCAGGCCCAAACCTGACCACATAACTCCTAAACAGCAAGACGTCTCCTTAGTAGCTTTAGGACTATTAAACTGGATGTCACCGGCTGCCACCTTAGCCAGAGTGCATTCTGGGattctgttgttattatttccaCCGTCTGCAGATGTCTTAGTGTTCCTGAAGTATTCAGGTGTGTAGTATTTCGGGATCTGCGTAGCCTGCATTAGGTTGTGTCAGTAATAAAGGCtttcaatgttaaatgtttagtcTCATATGGTAAAACATATCTATACATGTACTGTAGTTGCGGAATTCTATGAGGAATGTGTCCGTATGTGTTGCAACTTGACTTCAAGATTTGCTGTGTAGATTTGGGAGGATTCGTTTGCAGTTTCATGTCTTGTCATCCCTTTCCATGTTTTACTGATTACTGAACCTTCATAGCATACTGTAAACCGCTGCGTAGAAGTGTAAATGTCACCTGAACAGCAGCATTCGGCTGGAGAGTAGGgcttaaaaatcaaacaaaccagATTCTGAATCTCAAGTGTCTGTAGTATCCTTTCAATAAAGCATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59104 lncRNA upstream 217795 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 243753 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 259252 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 262466 45901867 ~ 45903185 (+) True G47383
TU58999 lncRNA upstream 310882 45851095 ~ 45854769 (+) False G47322
TU59322 lncRNA downstream 119752 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 242251 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 753586 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 792857 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 798635 46975516 ~ 46976186 (+) True G47684
AMCG00013897 mRNA upstream 2152 46160628 ~ 46163499 (+) True AMCG00013897
AMCG00013896 mRNA upstream 5235 46156424 ~ 46160416 (+) True AMCG00013896
AMCG00013892 mRNA upstream 10044 46150583 ~ 46155607 (+) True AMCG00013892
AMCG00013894 mRNA upstream 21047 46133626 ~ 46144604 (+) True AMCG00013894
AMCG00013895 mRNA upstream 41970 46103988 ~ 46123681 (+) True AMCG00013895
AMCG00013899 mRNA downstream 2260 46179141 ~ 46197897 (+) True AMCG00013899
AMCG00013900 mRNA downstream 22833 46199714 ~ 46207783 (+) True AMCG00013900
AMCG00013901 mRNA downstream 38855 46215736 ~ 46217211 (+) True AMCG00013901
AMCG00013902 mRNA downstream 83097 46259978 ~ 46270819 (+) True AMCG00013902
AMCG00013904 mRNA downstream 216928 46393809 ~ 46404685 (+) True AMCG00013904
TU59106 other upstream 223745 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 347696 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 804769 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1069982 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2724953 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 892820 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2071186 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2077413 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2091873 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 2104182 48281063 ~ 48351285 (+) True G48026

Expression Profile