RNA id: AMCG00013895


Basic Information

Item Value
RNA id AMCG00013895
length 2448
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00013895
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46103988 ~ 46123681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTGGCAGGTCTGCGTTTCTACAGATCTGTGAgcgagaaaaaaagaaacagaaaagagtgagggagagagagagcgagagagagagtcatgCCGCAGCAGTAATGGAGCTACGAGCGGAGTTACTGAAGTCTATCTGGTATGCTTTCACTGCTCTAGATGTGGAGAAGAGTGGGAAGGTCTCCAAGTCACAGCTCAAGgTTCTCTCCCACAACTTGTGCACCGTGCTGAGTATCCCCCATGACCCAGTGGCCCTGGAAGAGCACTTTCGGGACGATGATGACGGCCCTGTGTCAAGCCAGGGTTACATGCCCTACCTTAACAAGTACATCCTGGATAAGGTGGAGGAGGGCGCCTTCGTGAAGGAGAACTTCGACGAGCTGTGCTGGACGCTCACGGCCAAGAAGAATTACCGGCCCGAGAAGAACGGCAAGAGTGTCCTCCTCATGCGGGACGCCTTCCGCCTCTGGTGCCTCTTCAACTTCCTGTCCGAGGACAAGTACCCCCTGGTCATGGTGCCGGATGAGGTGGAGTACCTGCTCAAGAAGGTGTGCATGGCCATGAGTGTGGAGCTGAACTGTGTGGAGCTGGAGGACTACATCTCCCAGGAGGCCGTGCAGCAGACCGGCATCACCGTGTGGGTCTTCCTGGACCTGGTGAACTCGGGGAAGCTGATGCGGGGCATGGACAAGGACACAGTCAGCATGGCCATCGAGGAGGTGTACCGGGAGATCGTGCAGGACGTGCTTAAAGAGGGCTACCTGTGGAAGAGAGGACAGCTGCGGAGGAACTGGACGGAGCGCTGGTTCACCTTGCGGCCCAGCACCTTGGCATATTTCGTCAGCGAGGACCGCAAGGACCGCAAGGGCAGCATCCCCCTGGACAGGAACTGCTGCGTGGAGGTCCTTCCGGACAAGGACGGGAAGCGCTGTATGTTCTGTGTGAAGACGCCAGCCAAGACCTATGAGATGAGCGCCTCGGACACCAAGCAGCGCCAGGAGTGGAccacagCCATCCAGACAGCGATCCGGCTGCAGGCTGAGGGCAAGTCCTCGCTCCACAAGGACCTGAAGCTGAAGCGGCGGGATCAGCGTGAGCAGCGCGAGCGGCGGCGGGCGGCCAAGGAGGAGGAGCTGGCGCGgctgcgggcgctgcaggaggagaaggagcacaagctgcaggagctggagctgcTGAAGGAGGCGCAGCGGCAGGCCGAGGCGCTGCTGAGGGAGGACGAGCAGCGGCGGAGGGAGCAGCATGAGGAGCTGCAGAGGGCACTGGAGGTGCAGCTCCGCGAGGCCGAGGAGAAACGCATcaaggagctggaggagatgCAGCAGCGGCTGGAGGAGGCCCTGCACCTGGAGATCAAGGCCCGGCAGGATGAGGAGGCCTTCCGCTACGCACAGGCCAGACTGctggcggaggaggaggagaagctcAAGGCTCTGATGTCCCTgaaggaggagcaggaggagtaCATCCTGAAGACCCAGCGGGAGAAGCAGGAGCTCAAGCAGGAGATGGAAAACAAGTCCCGGTCCCTGGAGGAGGCCACGCGGCAACTGGAAGAGGTCCGGGCCAACCGGCACCGCGTCGACCAGGACGTCGTGGCCGCTCAGAGGAAGCTTCGCCAGGCCAGCACCAACGTCAAGCACTGGAACGTGCAGATGAACCGGCTGATGCACCCCATTGGACCTGGAGAGAAGAGGCCGACCATCGGGAGCGGTTTCTCCAGTTTCCGGGTGCCCACGCAGAAGGACCCCGGCCTGAAACTGAGGCAGAGATCGGAAGAGAAAGACGAAGAGAGCAAGGAGAACGTGGACAGCAGCGCGCTGGCCAAACGTCTATCCCACGCCTCCGACAGCGACATGGACACTCTGCCCTGAGTCACCTGCCCTCACGGACCGCTCCGGTTCGGGCCGAGACCTAACAGACCCCCCACTGCACAGGACTTCCATTCAGGCTAAAGACGTGAAACAAGAAGGAACATGTTGTTAcctattctttgtttttttatttctgcatgtGCTGTTGATTTAGTGTAACTACATTAGCagccttttaaataattttataatttcatttgtttgtttgctggctGCTGCACATTTGCTTTCTCTTGCTCCTCACGGTCATGTATTTATCAGGAGTCTTTGATAATCAGAAAAACTCAAACGGACGGACTTTGTTTTCTCCCCCCAGACCCCTCACAGAGGAGGAGTTACAAGGGGGTCATGTTGTCTTCTTTAGTGTGTCTGACATCCTGATTGGTCAAGTTGTCCGGACCTCTGAAGCCACTGGAGGAGACATGACCGCACTTGagtgtaattaaaaatcaaGTTGAAATGTTGGCATTTGTAAAATCTCTTCAATGGtaacttttactttttaaattgcaaagttataattgtaaaaaactTAAAGgttatgtaaaatgaaaat

Function

GO: NA

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59104 lncRNA upstream 156132 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 182090 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 197589 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 200803 45901867 ~ 45903185 (+) True G47383
TU58999 lncRNA upstream 249219 45851095 ~ 45854769 (+) False G47322
TU59322 lncRNA downstream 172952 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 295451 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 806786 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 846057 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 851835 46975516 ~ 46976186 (+) True G47684
AMCG00013885 mRNA upstream 56866 46037393 ~ 46047122 (+) True AMCG00013885
AMCG00013884 mRNA upstream 98521 45993213 ~ 46005467 (+) True AMCG00013884
AMCG00013880 mRNA upstream 125344 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013879 mRNA upstream 144794 45943712 ~ 45959194 (+) True AMCG00013879
AMCG00013881 mRNA upstream 202407 45895147 ~ 45901581 (+) True AMCG00013881
AMCG00013894 mRNA downstream 9945 46133626 ~ 46144604 (+) True AMCG00013894
AMCG00013892 mRNA downstream 26902 46150583 ~ 46155607 (+) True AMCG00013892
AMCG00013896 mRNA downstream 32743 46156424 ~ 46160416 (+) True AMCG00013896
AMCG00013897 mRNA downstream 36947 46160628 ~ 46163499 (+) True AMCG00013897
AMCG00013893 mRNA downstream 41970 46165651 ~ 46176881 (+) True AMCG00013893
TU59106 other upstream 162082 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 286033 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 743106 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1008319 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2663290 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 946020 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2124386 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2130613 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2145073 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 2157382 48281063 ~ 48351285 (+) True G48026

Expression Profile