RNA id: AMCG00013901



Basic Information


Item Value
RNA id AMCG00013901
length 462
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00013901
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46215736 ~ 46217211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGCCACTGTGAACGTGTCCTGTCTGCTGAGCGCTGCCCTGATGGCCGTGTCCGTCCTGCTGTCCCTGTCTGTCCCGCCTGCTGCTGGACACCATGTGCGTCTCGGGAGCTGCTCTGTCACCGTCCACACCAAGGAGCTGCGAGAATACTTCCACGAGATTCGGCACGCCATTgtcaaggaggatgacaACATGGGCATCCGGCTGCTGAAAGAAAACACCATGAAGaatgtgcagGCGTCCGAGAGCTGCTGCTTCCTGCGCCAGCTGCTGCGCTTCTATGTGGAGAGCGTGTTCAGCCAATACAGCACCAGCAGCCCCCAGGTGCGCCGCCGGACCAGCAACCTGGCCAACTCCTTCCTCAGCATCAAGAGAGACCTGCGCCAGTGTGTGAGTGCCTGTCGTGGACGCCGCCTGGGGCCACAGATCACTGTGTCCTCAGTAGGGCCAGTAGCCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59104 lncRNA upstream 267880 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 293838 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 309337 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 312551 45901867 ~ 45903185 (+) True G47383
TU58999 lncRNA upstream 360967 45851095 ~ 45854769 (+) False G47322
TU59322 lncRNA downstream 79422 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 201921 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 713256 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 752527 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 758305 46975516 ~ 46976186 (+) True G47684
AMCG00013900 mRNA upstream 7953 46199714 ~ 46207783 (+) True AMCG00013900
AMCG00013899 mRNA upstream 17839 46179141 ~ 46197897 (+) True AMCG00013899
AMCG00013893 mRNA upstream 38855 46165651 ~ 46176881 (+) True AMCG00013893
AMCG00013897 mRNA upstream 52237 46160628 ~ 46163499 (+) True AMCG00013897
AMCG00013896 mRNA upstream 55320 46156424 ~ 46160416 (+) True AMCG00013896
AMCG00013902 mRNA downstream 42767 46259978 ~ 46270819 (+) True AMCG00013902
AMCG00013904 mRNA downstream 176598 46393809 ~ 46404685 (+) True AMCG00013904
AMCG00013909 mRNA downstream 335820 46553031 ~ 46557951 (+) True AMCG00013909
AMCG00013913 mRNA downstream 526770 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013911 mRNA downstream 578831 46796042 ~ 46837010 (+) True AMCG00013911
TU59106 other upstream 273830 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 397781 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 854854 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1120067 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2775038 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 852490 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2030856 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2037083 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2051543 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 2063852 48281063 ~ 48351285 (+) True G48026

Expression Profile