RNA id: AMCG00013904


Basic Information

Item Value
RNA id AMCG00013904
length 4272
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00013904
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46393809 ~ 46404685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagagGCTGTGCTACTGTTTTAATTCGTGCATAAATCCgttaaaaacactgtaaagcatgaataaattcacacattcctccactaaacaaacacacaatcaacaAACACAATCGACAAACACGCAAGCGGACCCTCTTTGGCGGGTTGTCGCGCACCCGGACGTATTTACTGTTACGCCAAGATGGCGGCCTCCAGGGCTCGGTGAGGCCGTCATGCGTGTGTGCGGGACCCCGAGCGGAGCTGTGTTCATCGCCGCTAACAGCCGCCGCCTCTCCCCGGCGCGCAGCTGACCTCCGTGCGGACTGAGCTGACGCAGGAGCCGGCCGGGCCTCGGCGCATCCAGCCGCCCTTCCCCGCCACCATGTTCGCCAAGCCGTTTCGTGTCAAGTCCAACACCGTCCTCCGAGGCTCGGACAGACGGAAGCTGAAGACCGAGCTCTCCGCCGCTCTCCCCGCGCTGTCCGCCGCGCAGCTGGCAGAGCTGGTGCCGGGCAAAGAGGAGCTCAACGTGGTGAGGGTTTACGCGCACAAAGGAGACCCGGTGACGCTGTACGTCCTGCACAAAAACCCCGTCTTCTTCGAGGTGGACAAGCAGATCTACCCCACAGTGTACACCTTGTGGCGCTATCCTGATCTCCTACCAGCCTTCACCACATGGCCGGCAGTTCTCCAGAAACTGGCTGGGGGGGCAGACCTGATGCTGCCTGGGGTTGTGTTGCCCCCTGGTGGTCTCCCGCAGGTCAGGCAGGGGGATCGGTGCGCCGTCACGGTCGTGAGAAACAGAGCGCCGGTGGCCGTGGGCACTGCCACCCTGAGCACGGCGGAGATGCTGGGAGCGGGGATGAAGGGAAAGGGGGTGTCGGTGCTGCACACCTATATGGACCAGCTGTGGGCATTCGGGGACAAGTCCGCCCCACCATCCCTCCCGCCTCTCACCGCTGAGCCTTCCGGGAGCGGAGGGTTCTCTGCAGATAgcgaagaggaggaggaggaggaggagagggagggagatgtaGAGGACGCCCGTCCCGGTGCGGAGCAGGAGGGGGACACGGACGCCCCCTGCCACGCCCTGCAGGAGCTGTGGCTCTCTGAGAGCCAGGGGGGAGAGGGCCAGGAGAGGCAGGGCGATGTGGGacgggaggaagaggaggaggaggaggaggacgcaAAGTCTCCACAAGAGCAGATGGACGCCCTGCTGCTGCGCTGCTTCCTTCACGCCCTGAAGAGCACAGTGAGGAAGTCCGAGCTCCCCCTGCTGACCAGCTCCTTCCTGCGCAACCACATGTTCCCCTGCTGtccCAGTGGGAAGCAGATCGACATCAAGAAATCCAGCTACAAGAAGcTCTCCAGGTTCCTGCAGTGCATGGAGCAGCAGCGGGGCTTCGTCCAGGTGAAGGAGCTCAGCCGCGGTGTGGAGAGCATCGTGGACGTCAACTGGAAGCACCCAGAGCTGCGCTCGTTCTCCGTGCCCGAGGACGGCGTGTCGGGGGACAGTCTGGCGCCGGAGAGCTGCGCAGATGCCCGTCCCTACCAGCCGCCCGAGATCACCGCCCTGTACTCCGTGTCCACCCGGCTGCAGCCCCTCTTCGCCGACGCTAATCTCAGGAAGGGAGCCGCCCTGTCCGCCACGGAAGTGCGGACCATCCTCACCGACTACGTGAAGAGAAATGAGCTGGTGGACGAGCGCAACAAGAACTACGTCACCGTCGACCCCGCGCTGTGCGACTGCCTGCTGGACAGAGCGGAGTACCAGGAGGTGGCCCGGCTGCAGTGGGACGACCTCTTCTCCAGCGCCCTGCAGCGCCGAGTCCAGGCCAGCTCGGCCATCAACCCCCTGCCCGGGGCCAAGGACCGGGTCCAGGTCCAGATCCAGGGGAACCAGGTCACCCACGTGGGGAAGCTACTGTTAGATGAGTTCAGGATCCCTCGGAAGCACATCCAGGGTCTGGAGAAAGCACAGAAGCCCGGCAAGAAGAAATGAGGGACCGGCGCCGGTTCTGCGCACGGCCAGAGAGACGCAAGACTGACGGCTACAGGAACAGACTGCTGTAGTCAGTAAAGTCCGTTTCGCTTTTGCACATCTGGGCACGACTGTCGATCAGAGGAGCATGACTGTCTGTGTCTTTTATATGATTGAGGATCTGGCCGGACTGGAGCCAGGGGTCCTCATCCCTGGTCCTGCAGGAGCCCCCGCCCTGCTGGGTTCTGTTCCAACccagctcccaattacttaattgaacccttaattgaactattaatttcctaaatcggagccttttcattattttaaactgtaggggttttaagtgaaGTATGAAATTGGATAAAGAActtatgttattaattatgttaactttttatcagttacaattatttaaattaagggttcaattaagtaattaagagcttggttggaacacacagcagcagggtgggggggtcctGCAGCCCCAGGTCTCCGTGCCCCTGGTGTGGGCTGTTCTGTTTTATCGTGAGATGTTTGCCTGtcatttccagtttctgtacCAGGGGGCGTCTGGGTTTCACTTGTCATACACAGCCGTGTGTGCAGGGCTCAGAGACGCGCTGTTAAATCACACAGTTGTAAgagatgtatattaaaaaaatactcaaGTTATAAAATGAtggcatattttatttaattcattttatacaGCTTTACACATATTTGTACacatcttgtttttaaaaagtactgCCCGTGAGCAACAATTATGAACATCCCGACGGTGCATCGAAGAAGAACCGTAAAATAAATTACACGTTTATGGAGGCCCTGGTGAGAGCAGCGCGCTCCGCCTGGGCTCTTCTCGGATTTTTTACAgcctgttatgtttttattttactttatatgtACAGTCACACCAGGCAACACAGAACCAAGGCACTGGCAGCGGCCCGGGTGGGTCCAGTCAGCACTGAACGCCGAGCTCGTGAATGCGAAGCAAAGACAGAAGCACCCGGGTTGGATTGGGAGCAGATGGCAAGACAAAGCAAAATGTGCTTTTACACGAATGGGGCTGCGGACATAGATCGGGTCTctactctccctctccctctctctctctgcccgtGGGGTCGTCTCTGCGGTTCTGCTCACTCGCTCCAGCGCCCTTCACATTGGGCCACACTGCGTCTCTTACAGCACTCCTGtaagtgtgtatatacatttcacGCCTTCCTTGTATACAATACTATACATACTGGCCAAACCACCACAGTGTTAGTGCGTATCTGTGTTTTACTCATGGTGTTCTGTATTTCCTGTATTCTGGTCGGGGTGTTGAGTTATAAACCCGACACGTCCACGCTGCTGCTCTCGGGGGGGGTTTGAACATCCACACCTATAGCAGATCATCTCACGCTCTGGTCTGAGGCTCCTCTGGGGTTTATCAGCTCGGCGCTACAGGGTCCCCTGGCCAATATTcagcactgaaataaaatgcatctgatTCACTGAACATTGACCCCATTCAGACTGCAGCCCGTCTCTGTTCACACGCGAGTATGAACATGCGCTGGAGAGAGACTTCCCAGCCGCGTGAATGTCGAGGCCCGGTCCGCGTACGAGCGTTCATACGACGCCAGGGAGACAACGTTCTCACTGAAAAAGTCCTAATGTGTCACTGTCTCCATTTCTTTTTAGAACCCATTAAGTGCATAATTAAGAAAAGCCCGTAGAACTTTTGATTTTGGCGTACTTGTGCGCTGCAGACGGACTGGCCCGGGCAGCACCGCTCCGGCACAGACAGTACAGTGAGGATAAGCTCCTTATTTCAAACACCCGCTGTGTGCAAAGATTGTTTTCCCATCGCAGGATAAGTCTGATCGACGGGTCAAACTTACACTGTCTTTGAACCGGCACAATTCTAGGTTCCGATACCCCActcttaattaaactaatttgggtggggggggggcttgttttgcaaattaaaagtgGGGTTCTGTACTGTGGGTGCAATTTGGTAATCTGGATCAGGAACACTAACTATCGTTCGCTGATCCGTGCACCTGTCACTGTGATCAGGTGTAATACTGTCCCCGCCCCCCCATCCTCTcacctccctgccccccccggCTCACGCAGGCATGCATGGCTGTCCGGCGCAGTCACACAGTAACAAACATCGCATGCTCAGAAAGAAGcgcagtagcagcagcagcagcagtcgtTGCCTGGCTTGTGACCCCCTGACCCCTGCTCCGGCgggtcccccaccccccaccctccctgaCCCAGG

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K15027 EIF2D; translation initiation factor 2D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59322 lncRNA upstream 90940 46296633 ~ 46302869 (+) True G47546
TU59104 lncRNA upstream 445953 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 471911 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 487410 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 490624 45901867 ~ 45903185 (+) True G47383
TU59362 lncRNA downstream 14447 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 525782 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 565053 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 570831 46975516 ~ 46976186 (+) True G47684
TU59550 lncRNA downstream 742670 47147355 ~ 47156704 (+) True G47728
AMCG00013902 mRNA upstream 122990 46259978 ~ 46270819 (+) True AMCG00013902
AMCG00013901 mRNA upstream 176598 46215736 ~ 46217211 (+) True AMCG00013901
AMCG00013900 mRNA upstream 186026 46199714 ~ 46207783 (+) True AMCG00013900
AMCG00013899 mRNA upstream 195912 46179141 ~ 46197897 (+) True AMCG00013899
AMCG00013893 mRNA upstream 216928 46165651 ~ 46176881 (+) True AMCG00013893
AMCG00013909 mRNA downstream 148346 46553031 ~ 46557951 (+) True AMCG00013909
AMCG00013913 mRNA downstream 339296 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013911 mRNA downstream 391357 46796042 ~ 46837010 (+) True AMCG00013911
AMCG00013912 mRNA downstream 453955 46858640 ~ 46870713 (+) True AMCG00013912
AMCG00013918 mRNA downstream 605607 47010292 ~ 47012262 (+) True AMCG00013918
TU59106 other upstream 451903 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 575854 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1032927 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1298140 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2953111 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 665016 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 1843382 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1849609 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1864069 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1876378 48281063 ~ 48351285 (+) True G48026

Expression Profile