RNA id: AMCG00013906


Basic Information

Item Value
RNA id AMCG00013906
length 3101
RNA type mRNA
GC content 0.53
exon number 21
gene id AMCG00013906
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46452064 ~ 46465408 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAAACATGAGCCGTTTCTGCCCTGTGCGTTTTGTCCGCCTGTCTCTTTAAGGACCGGTACACAAGGAAGTGTCTGATCCAAAGCGAAAGCGGCTCCAGTTCCTGAACTGCTGCTCTGCTGCCCGAGCTCTCAATCCGGTGTGACTTCGCTAGAAAAGAGAAGTTTTATCGGTGTGTTTTAGGGGCGCCGGTCCAGCCGAGGCGAAATAAAGAGGCAGGAAGTCGAAGGCTTCCTCTGATGTCTTATTAGATTGCGACATCTTTCGCAACCGCGTTAATTCCTCGCCACCTGTGTGGACCGCGAGTGAGAGACTTGCTGCTCCAGTGTTCGCTGTCGTGCTCTACCAGAAgTGCAAACCTGAAGCCACACTTGGTGAGAACTTCGTCAGCCGATAAAATGATGGCCAGCACTGCTAACTTCCTCTGGTCCCCTGGGGACATCCTGGGACAGGGGGCCACTGCCAGTGTGTATAAGGCTCGCAACAAGAAAACGGGCGAGCTGGTGGCCGTCAAGGTGTTCAACAACATGAGCTACATCCGCCCGTACGAGGTGCAGATGCGTGAGTTCGAGATGCTCCGGAAGCTCAACCATTTCAACATCGTGCGGCTGTTCGCGGTGGAGGAGAAGCACATGCACGCCAAGCAGAAGGTGCTGGTGATGGAGTACTGCTCAGGGGGTAGCCTGCTCAACCTGCTGGAGGACCCGGAGAACGCCTACGGCCTCCCGCAGTCCGAGTTCCTCATCGTCCTGCAATGTGTCGTGGCCGGCATGAACCACCTGCGGGAGAACGGCGTGGTCCACCGTGACATCAAGCCCGGAAACATCATGCGCCTGGTGGGGGAGGACGGGCGCTCCGTCTACAAGCTCACCGACTTCGGGGCGGCGCGGGAACTGGAGGATGACGAGAAGTTCGTGTCCATCTATGGCACCGAGGAGTACCTGCACCCGGACATGTACATGCGCGCCGTCCTGAGGAAGCCGCAGCAGAAGACCTTCGGGGTGACAGTGGACCTGTGGAGCATCGGCGTCACCTTCTACCATGCCGCCGCCGGGTGCCTGCCCTTCATCCCGTTTGGAGGGCCGCGCAAGAACAAGCAGATCATGTATAATATCACCACCCAGAAGCCCCAGGGGGCCATTGCCGGCGTGCAGCGGGTCGAGGATGGGAACATCGAGTGGAGCTATGAACTTCCCGTCTCCTGTCAGCTCTCAGTGGGACTGAAGGCCCAGCTGGTCCCGGTGCTGGCCAACATCCTGGAGGCTGACCAGGAGAAGTGCTGGGGATTTGACCAGTTTTTCGCTGAGACCACGGGCATCCTGCACCGTGTGGAGATCCATGTCTTCTCCCTGCAGCAGGCCTCAGCGCATACCATCTACATCCACAACTACAAcacGGTGTCCATCTTCTTCGAGGAGGTGGCCAAACAGACGCAGGTGACCCCCGAGAGGCAGCAGTACCTGTTCCAGGGACACCCCTTCTCCCTAGAGCCCTCCATGAAGGTGGTGAATTTCCCCCAGACCACCGCTGACAGACCCCTTTTCCTGATCAGCCGTGAGCTGGAGAAGACTGTCGGAGCGATCACCGGAGTCATCCACCAGTACCTCAGGGTGGCGCGGTCCTTGATGAAGTGCCAGGACCTGGTGCTGCAGGGATTCTACTGTTTCTTTGAAAATGTGCGGCAGGAATGCAGCACGACAGTTCAGAAGATCAACATCCTGAACATGAAGCTCACGGCCTGCCTCAAGACCGAGGGACGGCTGAAGAAGCTCCAGCTGATTCAGGAGAACCTGCACCTCTACACCAACAGCGTCCGGGACTTCCAGACCAGCGTGGAGCACCTGAAGGTGGACTGGTCCAAACAGTCGGAGATATTGGCCAAGGACAAAACGGTACCGAAGATAGAGTGTCTGTTGGAGAAGATCACGCTTGTCTACCAGCAGTACCGGAAGGACAGGGTGGCAGgcaAACTGATGTACAACGACGAACAGATACACAAGTTTGAAAAGATTAACCTGACATCTCACATTAAGAAAGTGAAGTCTCTCTTCAAAGACGAGTGTCTGCAGAAGTACCAGGCCGTTCTGTGCAAGACGGCGGACTGGAGCAGCATACTGCACGAGATCAGGAGCCGGATAAAAGACTTCAGATGCATCTTCATCAGCTTGATCGGAGAGCTGCAGGCTTGCGAGGAACAGCAGGGACAGGTGCTGGAGCGAGCTCTCCTCAGGGGGCCGCAGGGCGCAGGGTGGGCCGAACCCCAGGGCTGCGGGAAGGATCGAGACCAGATGATCTTCAGGATCAGTCGGCTGAGAGACGAGATGGAGGCGGTGGCTCACGAGCTGCAGCGAAACAACAGCATCATCGAGAGCTTCGGGGTCCTGAGCGCCAGTCCAGGCGTGTGAATGTACAATTGATCCCCGGCCGGCGGCTGTCAGCGTCCAAACATGCCACTCACACGCCACTCGCATGCCACTCGCATGCCACTCAGGATCAATGTAAAAAAGTTAGTCAGTTATGTGAATTTGGTTTCTttatacttatgtatttattaagtgACCTACCTGCTGGTTTAtgtacctatctatctatccatctaccTGATTATTTGTCTTggtgtatatatttgtctttctgCCATGAAAAGTCCTCAGCCTGTGGCCACAAGGGGGCAGACTTGCTTGgggtttttattttgggggcgGAGTAAACATGCAAACATCATTCTCTGCTCTAGTGCCAGTCAGAGTCACAGCAGTGGAGATACTGGACACTTTCACATTGTTGTGAGGTCGAGTATTTCATACATAGAATATTGAAGAACCACTtcatcattcatttaaatggttgtctccctttatttttattttttactttgtatatgtgcaaaatatgtatatcctcatattttatttctgttcaagTACACTTCATTAAAAGCTAGAAAAGCCTGGAGTGGAGCTTATGGTCTTGGGCTTAAAACTGGAAGATTATCAGTTCAAACCCCAGTACAAGGAatgttttacagtaaaaaactaaacaaaacaactgccttttcttttcctaCTTTCTGTATTATTGTGAAGCATGGTTAAACACCT

Function

GO: NA

KEGG:

id description
K07211 IKBKE, IKKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59342 lncRNA downstream 149364 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 213550 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 529150 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 529194 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 597264 45845849 ~ 45854800 (-) True G47365
TU59468 lncRNA upstream 338203 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 592131 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 605935 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 760393 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 1030003 47495411 ~ 47495684 (-) True G47807
AMCG00013907 mRNA downstream 45133 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013908 mRNA downstream 62446 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013905 mRNA downstream 65823 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013903 mRNA downstream 140946 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013898 mRNA downstream 349448 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013910 mRNA upstream 4963 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013914 mRNA upstream 465167 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013916 mRNA upstream 504851 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013915 mRNA upstream 511283 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013920 mRNA upstream 529734 46995142 ~ 47000214 (-) True AMCG00013920
TU59251 other downstream 288577 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 368522 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 477753 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 527716 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 828169 45623238 ~ 45623895 (-) True G47261
TU59474 other upstream 406461 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 732935 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1399442 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1502017 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 2352575 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile