RNA id: AMCG00013907


Basic Information

Item Value
RNA id AMCG00013907
length 699
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00013907
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46404824 ~ 46406931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCCCGACTGCCTTACATGGGAGGAGAGCCACGACCGTAAACAAGACCGTTATGCCTGCGTGTCGCATAATGCTGCAaaggaagaagaggagaaacCAAAGGAGCTCTCGAAGGACGAGATCAGGGCGAAGATCGATGACTACAACGCCAAGGTCTCTGAATGTGTGGGAATGAAGCTGAGCGAGGACGGCACCTACACCGGCTTCATCAAGGTGCACCTGAAGCTGCGGCGGCCGGTGACGGTTACGGGGGACGGCTCGGACCGCAAGACGTCCTTCTACCTGCCGCTGGACGCCGTGAAGCAGCTGCACATCAGCAGCACCACCATGGTCAGCGAGGTCATCCAGGGGCTGCTGCGCAAGTTCATGGTGCTCGACAATCCCCGCAAATTCGCACTTTACCGACGGACGCACCGCGACAGCCAGGacctGTTCCAGAAGCTGCCCGTGTCGGACCATCCCTTACTCCTGCGCCTGCTGACCGGGCCGGACCCCGAGAAACTTACCTTTGTGCTGAAGGAGAACGAGACGGGGGACGTGGAGTGGCACGCCTTCTCGGTGCCCGAGCTGCAGAACTTCCTGACCATCCTCGAGAAGGAGGAGCGCGACCGGATCAAGCAGGTCCAGCAGAAGTACGAGGCATACCGCGAAAGGCTGAAGCGGGCCTTGCATGAGTCACAGGGCAAGCCGGGGTAG

Function

GO: NA

KEGG:

id description
K08015 RASSF5, RAPL; Ras association domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59342 lncRNA downstream 102124 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 166310 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 481910 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 481954 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 550024 45845849 ~ 45854800 (-) True G47365
TU59468 lncRNA upstream 396680 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 650608 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 664412 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 818870 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 1088480 47495411 ~ 47495684 (-) True G47807
AMCG00013908 mRNA downstream 15206 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013905 mRNA downstream 18583 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013903 mRNA downstream 93706 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013898 mRNA downstream 302208 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013891 mRNA downstream 317046 46087083 ~ 46087778 (-) True AMCG00013891
AMCG00013906 mRNA upstream 45133 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013910 mRNA upstream 63440 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013914 mRNA upstream 523644 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013916 mRNA upstream 563328 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013915 mRNA upstream 569760 46976691 ~ 46985670 (-) True AMCG00013915
TU59251 other downstream 241337 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 321282 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 430513 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 480476 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 780929 45623238 ~ 45623895 (-) True G47261
TU59474 other upstream 464938 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 791412 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1457919 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1560494 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 2411052 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile