RNA id: AMCG00013908


Basic Information

Item Value
RNA id AMCG00013908
length 435
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00013908
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46388154 ~ 46389618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGCCAACGAACAACACAAACGCCAGATCATCTCGGTTTTCTCTGCGCTTTTCCGATGCCTGGGAAGTGCGGGTTACTCGAGATGTGGCCCGTGTTGGCCGGTCCGGGGGCAGCTGTCTTCTGGGACTCAAGTTGGCTCCTCAAGGATTCCCCCCTCCAGTAGTCAGTCTTGCTGGCAGCTGGGTTGTACTGGGGGGGACAGGCAGCAGTTGCCCAACAGGACGTTGACCAACGTGTCAGTTGGGAAGCTGTCGTCACTGCCAGCAAGTTCCTGCTCGGATTTCCCCAGGCTAGTGCCTCCCCGGCACGGCGACGGCCTGTACGACTCCTACATGAGGACGGACCCGGTTGGAAACGAAGACCCGGACTCCCACGGCCACAGCCCCTCCTCCCTGCCCCCGCTGCCTAAACACACGGTAAGAGTCCCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59342 lncRNA downstream 85454 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 149640 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 465240 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 465284 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 533354 45845849 ~ 45854800 (-) True G47365
TU59468 lncRNA upstream 413993 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 667921 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 681725 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 836183 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 1105793 47495411 ~ 47495684 (-) True G47807
AMCG00013905 mRNA downstream 1913 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013903 mRNA downstream 77036 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013898 mRNA downstream 285538 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013891 mRNA downstream 300376 46087083 ~ 46087778 (-) True AMCG00013891
AMCG00013890 mRNA downstream 304840 46075764 ~ 46083314 (-) False AMCG00013890
AMCG00013907 mRNA upstream 15206 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013906 mRNA upstream 62446 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013910 mRNA upstream 80753 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013914 mRNA upstream 540957 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013916 mRNA upstream 580641 46970259 ~ 46976190 (-) True AMCG00013916
TU59251 other downstream 224667 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 304612 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 413843 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 463806 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 764259 45623238 ~ 45623895 (-) True G47261
TU59474 other upstream 482251 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 808725 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1475232 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1577807 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 2428365 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile