RNA id: AMCG00013910


Basic Information

Item Value
RNA id AMCG00013910
length 3333
RNA type mRNA
GC content 0.63
exon number 21
gene id AMCG00013910
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46470371 ~ 46507717 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTCTGGCCCACGCGTCCGGGGCCCTCCAGATCCGCGCCCAGCTGGTGGAGCAGTTGAAATGCCTGGACCAGCAATGCGAGCTCCGCGTCCAACTCCTGCAGGACCTCCAGGACTTCTTCCGCAAGAAGGCCGAGATCGAGGTTGACTACTCCCGCAACCTGGAGAAGCTGGCCGAGCGCTTCCTGGCCAAGACCCGGAGCACCAAGGACCACCAATTCAAGAAGGAGCAGAACGTGTTGTCTCCGGTGAACTGCTGGAACCTGCTGCTGAGCCAGGTGAAGAGAGAGAGCCGGGACCACGCCACGCTCAGCGACCTCTACCTCAACAACATCATTCCCCGCTTTGTGCAGGTCAGCGAGGACTCGGGCCGGCTCTTCAAGAAGAGCAAAGAAGTGGGCCTGCAGCTTCAAGAGGATCTGATGAAGGTTCTCAACGAGCTTTACACGGTCATGAAGACCTACCACATGTACAACACGGACAGCATGAACGCCGAGTCCAAGCTGAAGGAGGCGGAGAAGCAGGAAGAGAAACAGATGGGGCGCTCGGTGAAGCAGGAGGACCGGCAGAGCCCGCGCTCCCCGGACTCACTTACCAGCGTGCGCATAGAGGAGAAGCACGTGCGTCGCAGCTCGGTCAAGAAGATCGAGAAGATGAAGGAGAAGCGCCAAGCCAAATACACTGAGAACAAGCTGAAGGCAATCAAAGCCAGGAACGAGTACCTGCTGGCGCTGGAGGCCACCAACTGCTGTGTGTTCAAATACTACATCCACGATCTCTCTGACATCATCGATCAGTGCTGTGACCTGGGCTACCACGCCAGCCTGAACCGGGCTCTGCGCACCTACCTCTCGGCCGAGTTCAACGTGGAGTCCTCGAAGCACGGCGGGCTGGAGACCATCGAGAACGCCGCCGAGAACCTGGACGCCAACATGGACAAGCAGCGGCTCATGGAGATGTACAACAACGTGTTCTGCCCGCCCATGCGCTTCGACTTCCAATCCCACATGGGAGACTCGgtGGGACACATGTGTGCTCAGCAGCCCCTGCAGAGTGAGCTGCTCCAGAGGTGCCAGCAGCTGCAGTCCCGCCTCTCCACACTCCGGATCGAGAACGAGGAGGTCGGTGCCGCCCGCCGGGACCCACGATGCAGTGCACCGCCGCGCCCGGGCCCGAGACTGACGCCCCTTTGTGCCCCGCAGGTGAAGAAGACCATGGAGGCGACGCTGCAGACGATCCAGGACATGGTGACCATCGAGGATTTCGACGTGACCGACTGCTTCCAGTACAGCAACTCCATGGAGTCGGTCAAGTCCACCGTGTCCGAGACCTTCATGAGCAAACCCAGCCTGGCCAAGAGACGGGCCAACCAGCAGGAGACCGAGCAGTTCTACTTCACGAAACTGAAGGAGTTCCTCGAGGGCAGGAACCTGATCACCAAACTGCAAGCCAAGCACGACCTGATCGAGAAGACACTGGGAGAGAGTCAGAAGACAGACTGCTGCCTGGCCAGCGGAAGAAGAAACTCCACTGTGCGGAAACAGGACTCCAGTCAAGTCATCCCTCTGATGGTCGAAAGCAGCATTCGGTTTATCAGCCGCCATGGTCTGCACCATGAAGGCATTTTCCGAGTGTCGGGGTCCCAGGTGGAAGTCAACGACATCAAGAACGCCTTCGAGAGGGGAGAGGACCCCCTGGCGGGCGATCAGAATGACCATGACATGGACTCCATCGCCGGGGTGCTGAAGCTGTACTTCAGAGGGCTGGAGAACACCCTCTTCCCAAAGGAGATCTTCCATGACCTCATTTCCTGTGTCTCCCTGGACAGCCTGCAGGAGAGAGCCATGCACATCCACAAAGTCCTGCTGTCTCTGCCCAGCCCCACGGTGGTCATCATGAGATACCTGTTTGCCTTCCTCAACCACCTGTCCCAGTACAGCGAGGACAACATGATGGACCCCTACAACCTGGCCATCTGCTTCGGCCCCACGCTGATGTCGGTCCCCGAGGGCCAGGACCAGGTGTCCTGCCAGGCGCACGTCAATGAGCTCATCAAGACCATCATCATCCACCATGAGAGCATCTTCCCCGGTCCCCGCGAGCTGGAGGGGCCCCTGTACGACCGGGGCGGCGTGGCCGAAGAGTGCAGCGACGGCCCCCACGCCGAGCCGCCGGTGTCCGAGGACCTGGTGCCAGACACGGTGTCCGAGCACCACAACAGCGAGGACGAGTCGGAGCCCATCGAGGCCATCGCCCGCTTCGACTACTCGGGCCGCACCCCCCGCGAGCTGTCCTTCAAGAAGGGCGCGTCTCTGCTGCTGTACCAGCGCGCCTCCGATGACTGGTGGGAGGGACGGCACAACGGCGTGGACGGACTGGTCCCGCACCAGTACATCGTGGTCCAGGACACGGAGGACGGCTTCACCGAGCGAGGGAGTCCGAAGGCGGAGCTGGAGGTGGCGTCGGACGGGCCCCTGGCGGAGGAGAAAGTGTCCGCTAGGGGCAGCGTGAGCTCGCCCACAGGAAGCCACGTGGCAGACATCTACCTGGCCAACCTCAATAAGATGAGAAAGCGCCCAGATACCGGCAGTATCCACAGGGCCTTCCGCACCGAGGGCCTGGGACTGGGCACCGGGCCCAGTGATGGGACCCCGGGGGCCACGGCCGGGCTCCGGACCACCTCCATGCCGGTGGGCGGCCTGCCGAAAGAGGGGCCGGACAAGAGGCCCGTGAGCGCCCACAGCGTGCTCAACTCCATCACGCGCCACTCGTCGCTCAAGAGCAAGGTGGAGAGCCCGCAGTTCCGCAAGACGGCCAGCGCCGGGCGCTCCAAGAGTTTCAGCAACCACCGGCCCCTGGACCCCGAGGTCATAGCGCAGGTAGAGCACAGCTCCCAGGACATCGAGGCCACGATGAACACGGCACTGAACGAGCTGCGTGAGCTGGAGCGCCAGAGCAGCGTGAAGCACACCCCCGACGTGGTGCTGGACACGCTGGAGCAGCTGAAGAGCAGCCCTGGCCCGGGCCCCACCTCGGAGCCGTCCAGCCCCCTGCACGCGCGGCTGCTGCGGGAACCCGACAGCTCCCAGCACCCCCTGCAGCGCAGCTCCAGCTCGGCCAGCGACGGGCCCAGCACCTTCCGCCCCGTCAAGACCCCCAAGCAGCAGGCCCCGCCCCCCGGCCGCGACGCGCGCCCGCCCGCCACCCGCCCCAAGCCCGTCGTCTTCCCCAAGACCGCCTCGGCTGGCCCACCCATGGGctcccccacctccaccacGCCGCCCACGCCCCCGCCGCCACCGCCGCCCTCTGACAAGTCCTGCCCCGTGTGA

Function

GO:

id name namespace
GO:2001223 negative regulation of neuron migration biological_process
GO:0046847 filopodium assembly biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0060996 dendritic spine development biological_process
GO:0051014 actin filament severing biological_process
GO:0005829 cytosol cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0044327 dendritic spine head cellular_component
GO:0030054 cell junction cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59342 lncRNA downstream 167671 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 231857 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 547457 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 547501 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 615571 45845849 ~ 45854800 (-) True G47365
TU59468 lncRNA upstream 295894 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 549822 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 563626 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 718084 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 987694 47495411 ~ 47495684 (-) True G47807
AMCG00013906 mRNA downstream 4963 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013907 mRNA downstream 63440 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013908 mRNA downstream 80753 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013905 mRNA downstream 84130 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013903 mRNA downstream 159253 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013914 mRNA upstream 422858 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013916 mRNA upstream 462542 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013915 mRNA upstream 468974 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013920 mRNA upstream 487425 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013921 mRNA upstream 507339 47015056 ~ 47017727 (-) True AMCG00013921
TU59251 other downstream 306884 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 386829 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 496060 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 546023 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 846476 45623238 ~ 45623895 (-) True G47261
TU59474 other upstream 364152 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 690626 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1357133 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1459708 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 2310266 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007849 False 7297 mRNA 0.44 23 NC_007122.7 21406686 ~ 21585176 (-)
grasscarp (Ctenopharyngodon idella) CI01000058_02911431_02958568.mRNA True 3192 mRNA 0.53 20 CI01000058 2911431 ~ 2958568 (+)