RNA id: AMCG00013911


Basic Information

Item Value
RNA id AMCG00013911
length 7870
RNA type mRNA
GC content 0.42
exon number 14
gene id AMCG00013911
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46796042 ~ 46837010 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTGATAcagcagcagctggggAACAAACAGCTGGCgtttcagcagcagctcctccagatgcagcagctccagcagcagcacctCCTGAACCTGCAGCGGCAGGGCCTGGTGAGCCTGCAGCCAGGCCAGGGGGCCGTGCCCATGCAGACGCTGCAGCAAGCCATGTGTCCCGCGGACCTGCAGCAGCTCTGGAAAGACGTGGCCAGCGTGCAGAACGCGGAGGACGCCATGAAACACGAAGGCCTCGACCTGACAACCAACAGCTCCAACACTACCTCGTACTCGGCCGCTAAGGTCTCACCTCAGATACCCCATCACTCTTTGCCAAACGGACAGAACTCTGTGCACActccaaagagagagagAGCAAGACTCTTTGACTGGATCTCCTCCTTCATGAAGGCCGAACCTGTGGATGATCACTACACCCCACACTTGAAAAGCGGTTACCTGCAAAACATCCACTCTTCCCACGAGGAGCACACGGGCACACACCCTCTGTACGGACACGGGGAGTGCAAGTGGCCCGGGTGCGAAGCGCTATGCGATGACATGGGCCAGTTTATAAAGCACCTCAACAGTGACCACGCCCTGGACGACCGCAGCACGGCCCAGTGCAGGGTGCAGATGCAGGTTGTTCAGCAGCTGGAGATTCAGTTGGCCAAGGAGAGCGAGCGTCTTCAGGCCATGATGACTCACTTGCATATGAGGCCGTCGGAGCCAAAGCCCTTCAACCAACCTCTCAACCTGGCCTCCGGCGCGACTCTGCTGAAGAGGGAGAGCGACACATTCCCGGAAGGCTTacctcacccccccacctcgGCCACGGCGCCCATCACCCCCCTGCGGCAGGGCCCCTCGGTCATCAGCTCCTCCAGCCTGCACGGCCTCGCACAGAACCACGAATTCTACAAAAACGCTGATGTCAGACCTCCCTTTACCTACGCCTCGCTCATACGACACGCAATATTGGAAGCCCCCGACAGACAATTAACCCTCAACGAAATCTACAACTGGTTTACGCGAATGTTCGCCTACTTCAGGAGAAACACAGCAACATGGAAGAATGCTGTGCGCCATAACCTGAGTCTGCACAAGTGCTTTGTGCGAGTAGAGAATGTGAAGGGAGCAGTGTGGACAGTGGACGAAGTTGAATACCAAAAGAGGAGACCACCAAAGATGACCGGAAGCCCCACTTTAGTCAAGAATATGATATCAGGACTTGGTTACGGATCGCTGAACGCCAGCTACCAGGCCGCCCTGGCCGAGAGCAGCCTGCCACTGCTCAACAGCCCCACCCTGGTGAACACTTCCACCGGAGCCAGTATGAACATGCTACACGTGGGCCACGATGACGTAAGCAGCACGGTGGAGCAGGTCAACAGCAACGGCAGCTGCAGCCCCGGCCTGTCCCCCCAGCAGTACGGGCACCAGGTCCACGTCAAAGAGGAGCCGGCCGAGATGGAGGAGGACAGCCGGCCCGTATCGCTCATGGCGTCGGTGCCACAGAACCTGGCGCTGCCCGGAGACGAGCGGGACCTGGAGGAGGACATCCCCGCCGAGGAGTTGGAGTAGAGGATGGGGACGACAAATGCCACACCTCTTTCTCACGAtgtaaagtaaaagaaaaaaaaaaaaaaaaagaaaaagaggagaaaagaaaaaaaaggaaaaatactaACAGGGTCAGGCCTCACTTCTGCTCACAAACTTCAGCCACAGTACCGACCGGGGCAATGTTGACTCACCAGGCAAGGCTCTCAGACTCTCCGGAAAAACTAaattaggttttcttttttttggtttgtttttttgtatttcttgatgttagttttcttttttactgcTCCCAAATTATGCTGATTTGGTGACCTTAGTTCAACACAGACCTGAAGCTCCCTTGTCAGAGACGAAGGCGGGATCCCTCTTCCACCCCCGGACCAACGTAGACGTACGGTGCGAACGGTCTGGTTCTCAGTGTTACGGCGTTAGTGGTCAGAGATTTTACcacacaaagtaaaatatatgtctgtgtgtgtgtggccgtATGTATTCACaaccacaaacacatacacatatatctATTTTTCTATGATTATCTCCTGGAGGTACCTTTCTTTccattgaactttttttttttttttccccgctTTCTTTTGTGGGGAGAAGCGATGGCAAACGCTCGACACATTACCTCAGAAATCGGttggaagagagaaaaaatactgATCAATTTTGGGAACGAAGTTACCCTATGAAGTGTTATATTCccagtgtttttcattttgatctgGGGGTGTTTCGAGGGAGAGCTGGGTCTGAAGATGACTGGGCGGAGGTGCCACCCTGCTCGAGTCCACGTACAGTTTGAACAAGCAGAACTGCCCATGAGATCTTCATTCAGCCCGATTTAAAaacgcaaacaaacaaaactgtaaggAGCAAGTCTGTCACGTATCGGTTTGGTTTTGGTCCTTTTTTCATGGTGGAGAACTTGGAGAAGGGAAATCTGAATGTTTCATTCCTGTTTAGGGACATGTTGTAATTAGAAAAAACGCTCGCTTGCTAATGCACAGCCCCTCTGTCGCGGCCGCGCCGGGCCGGGATTTCCGTTTCAGCCCGGAAGACGAGAGTCACGGCGCTCTTCAGTGAAGACGGAAGGCATCGGTCAAAGAAATCGAGGAAAGGACCATCAGCGTTCTTCTTCGTCTCGACAGCTGTACGGTTTCTCTAGGCTGCACGAACGAATGCCATCTGACAACCGGAACGGAGGGAACTGCCAATTGTGACATTTGAGCACTATACTGTGGGTGACtcttaaaatgttatgtgttagggttcttctttttcattttgtcttttgtttctttccaaggatcactttttttttttccaggatgGCATTTTACAGTTGCTACACTAGGTGTCTCCAGTaaacaatgattttttttatttttattttgggtattttttaagaaaactgcttttttttttttctgtgtgtccCCCGCCCCTTaaacccacgcacacacacatgcgctcacatacaaaacacacttTAGTTGGTTTCAGAAACATCCAGTCCATACGAATTTTCGTTTCCTTCCAGCTTGTGACGTGGATGGATTTAAAGTAGTTTCTCAAGAATAGCACTTAATGTCTATAGACTGGAAATCTCAACCCCAAACGCAATCTGTACACCGAAGGATGGATTCGTTACACTCCGCGAGGTTTATAGTTGCAGTAAAAGTAGTCTTGTAGTATGAAATCTGATTCTGTGTCTAGTCTCGTCGGTCCAGTGAAGAGAATTTCTGCACAGACATTAAGCAAAACATCCCTAGTTCAGACAGTTATCcatgtctgtttttcatttccttttcctctattatttgtttctattatttctattattactACCATCAGCTGCGATACAAAGCATTgctttaagaaatatatatactgtcaCACAATACCTCATTCCACTAAGATCCTACCTTGAACCGTATCAAGTGTGATTCGTAGGTGACTCTTAATGTGGGTAACCAACTTGGTGACTCTTTGCTCAGTATAAGTTTAAAGTTATATTCGTATATAAATTTATAAAGCTATTTTGCAGTTCACTATGTGAATTGGATTTTTTGGAACAGCGTGTTGAGATTTTAAACTTTTGTCCGTGAGCACAAAAGCAAACCTTTTTCTGCAGTGCCATACCAAAATTTAATGActttctattgtattttttgttaccCGTTTTATTTGCGTTACAGGTTACCAAAGAGACGTGTAGTAAACCAAAAACCCTTCAGTTTtaccttttgttttatattaacctTTTCCTCCAAAAGTACTGGCCAAAAGAATAccattctgtaatgtttttatgatgatgatgatgatgattactaatacttcttcttcttcttcttcttcttcgttaAATTTCATGACTTACAGTACAGAACATTCCAAACCAAAGTTAAAAgcaaaggacaaaaaaaaaattactaatAATGATTTGGTTTCTTAAAAGCTTTGAAAAGATCAGTTGTCTGGACAGAAGGATACATAATAGGTATGGTAAAAGGCTAAAAAAGAAACGACAGTATTAACAAACCTCTTACAGTTctttttgaataaaaaaagcacttaaataaagtttaaaaaagtaaactgTACCATTTTCACGCTCAGGCGAACAGTGTTTTAAACACAACCCTAGTAAAGCCTCACGTTGGaagattttaaaatcttttgtaCCCTTTTAAGGCACTTGAAAGCAACAGTACATGTACCTACGCATGGGAGAGTAGCCTCTCGGTATCCATTGTGATGTTTCAATGCCTCTCTCCAGTGGATACCTTTAAAACAGAGATACCAAATGAGCGAATAAACCTACAGACAAACAAGGAAGACACAAACAGACGTGCACGGTTCGTGGCGTCGCGCCCGTGCATTCACGTAATCCGACACCCAGCCCTGTACTACAGCTCCACATCTaccaaattcattttaatttaccaCCCTCTCTTGAAGCGGTTAGCCTATATGgcgtgtattttttttttcatttatgttttttgctgctgtctttttttcttttattaatgaaactgaaatttaaaaatgggaTCAGTAAGCAGTTTACCAGAcatgttgttttctctctctgtggtcTACATTAACACTAAGAAGAGCAAGGGAGTCATTCTTGCTTTTGATACTCGGATGGGACTTCTTGGGACTGTATGTTTTGGGtcgtctgtctctccctccctgaggTGGTCTATGAAGGGGCAGCAGATTTATAATGTAGCAAAACTGTTGTCATGTTTTCCTCATGTTCTCTTCGGAGCCGAGTGACAAGGATTGCCTCAGGCTCTTTGGATGGATAGTGATGCTGTAATTCTTCAGCTGTATTGGATTGGATTATTCAAACCAAGCTTCCCACAATTGATATCTTTTGAGACAATCTAATAGTAGTGAAGTTCCTTCTGTTCttttgcaacttttttttttggtccaaGTCAGGTTTGGGACCAATATGGGaatattgaaaataacacagaacttgtgtttttgtgtgtttttctatttaatttgtcTCAGAATAATCATAAGAGACAGCtctttattcaatttatttgtattgtttcattgCTTCTAaactctctcaaattcaaatctATAGTTTAGAGTATAAGCAGTGATcgatacacaaacatacatttgaCCGATTACCAATAGGCAGTGTAGTGGTATTACATTATAAGATCATGTAagatcacaaaaacaaaaatctttatTGTATAACTGCAGAGTAAATacgttttattttgtgtgtgcaagtcacaaattgtaaataaattcCAATAAAGAGCCGGTCGTACTTTTTGTAAAGGCCAAAACAGACACTGTCTGAGATAATCCACATTTAGAAAGAAAGtggataaaaagaaaagttgcAAACGCTGCTCAACTGGTTGTTTATACTGTTTAGCTTAAAACCAATGTTTTTCGTTTGTGTTGGAACACCAgtcatgggggtggggggggagatcACTGGCATTTTACACTCatatcaaatgtgtgtgtatatatacagtataaatacagAAAGGCCAGGGAATCATAATTGGATGGTATAGAAATCTATTTCCAAGAATCAAAAGCAATTTGAACCATCCCGCGCTTGATAGAGACAGAACTCGCTCCCTCTGCCCTTTAGATCCCACATCAATAAGTTATCACACTTTCATCgatttattttccctctcctgttattttaaagcagaagtTTGCAACAGACTATTGTGACCAACCTATACCAATTTATAAAATCGTTCACATGACTGCGTTTTCACCGTAAAACGAAATAATCCAAAAAtgaaaccagaaataaaaacactaccTCCTTGCCCATGTTTGTTTCAGAGCAAAATACAACAAGGTTTGAGTATCCCTTGAGTATGCCATGTGTAACCCACGAGTAACCCATGAGTATCCCATGtgacatctttttttattacaattactaccactactactacttcacatacaaaaaacactcaaaaaaaaaaacacaaaccaaaacacaatttCCTGTTGCAACTTAGAGAGACTAAAAAGGTATAATTTTCTGATGCAAACCCTAAGCCTCCCGTTGCATCTGGACTCCAAATGAGAATAACAGGCTTGAACAGAACAATACTGTACTACATGAAAAATGACTACCTCtccaaaaaaaaactgaataaaaagaCTGTTCTGCGAAGAGCAAAACAGAAGCGGTCAACATATTTAAAAGGTCTACACAGAATACATATTCACCTTCTTTAAGTGATCTATTAGCATATCCTCTATAAACACGTCCTTTATGTTGCAGCTTAATTGCGTCCTCTAATTACCGCAGCATAATGAAGACTGGCTCGCTTTAAGCCAATCAGAACGCATCTGAATGGCCAATTATCAAGTGGGCTCAATAGAGGCAATCACACCATTGTCTGGGAGACTGTTTGGCTGCACAAATTGTTCCCAACTGGTCGGGTTTTAAGATGGaggtgttttcttttcaactagctgtaatgataataatacaaactaaaGTTATGGCCCACTGGTAAACAATCCCACAAACGAAACCCATTGCTGGATTAGGACAACAGTCAGCTGATGAATCAAAGGTTGCGTTTCCTGCTTCACAGCTGTAGCGGCCAGCTTTGCCCTGCCTCTGCAGAGGAGGATGGATACGGGGTGATTAAATAGTAATGCTCGAGTGATTCCTCTCGGCTTCAACTTGGCTTTGTTTTTTAGTGGCGGTGAATTCAGTCGGAGAGACTTAAATGGGCTACAGGACTATAGTGAAGGATATTCTTCTGAGATCACTGAAAGATCTTGTTCTCCCGTTTGTCCGTGCAGATGTACAGTGGGGGTGGGATCTCTGAATAAGGCACAGGCTGTCCGCAtctttcattgtgtgtgtgggggtgtccctctttgtttttctctcctgtaCAACTTGGCATTGTATATTTACAACACAAATAAGATATCCAAAGACCACAACGGAACTTGTTATGCTACCGTGCTCATGACACGGGGGGGGACGGGGACAAAACCGCATCTTaaagagtgaaaataaatctagAAAATGGAACTGCTGCATTTACAAAATGAACTTCAATTGTGCTTTAAGGTACACCTGTAAACAAACTCGTTTTATAAGACGTAGATGAACTGACATCCTTTGATGGAATTAGAATTCATTACACTTAAATAAGTTACTTTACAAACTTCTTCTCgatgtgttattgtatattaagGCTTGGCTTGGCTCTCaagagcagttttttttttttttttctttcctccatttttttttcatgttttcctgttttaatttactgCACCAGTTTAGCTATTGTAAAGCTTTGAGCTCAGTTTTTCCTATACTGTATTGCTTATGCTaaagtgtatgtatttatcataATAAGTGCAGCAGATATAATGGttaaatagatttgttttttggtttgttttcggtttgtttttcatgaaacGTCTGggacgatttttttttttttatgtgtattatctttaaaaaaaaaataataataagttagaTAAGTGGTTTAGGTAACACacctgtttgtatatttatcttAGCTAGGTCTATTTTGATACTTTTTGTCTCCGTactgcatttatgcatttttaaggaaaaaaatcgaaaacaaaaaaaagtaaacaaacaaataaaagaaaaaaaatcattgtgtattgaTACCTCAGAAGGACTTTTCTCAAAGACAGGACCAAAACCTCAAAaagtaaactaaaaaaaaaaaaaaaaaaagtgaagaaaatg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09409 FOXP2_4; forkhead box protein P2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59362 lncRNA upstream 325571 46419132 ~ 46470471 (+) True G47580
TU59322 lncRNA upstream 493173 46296633 ~ 46302869 (+) True G47546
TU59104 lncRNA upstream 848186 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 874144 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 889643 45906102 ~ 45906399 (+) True G47387
TU59479 lncRNA downstream 93457 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 132728 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 138506 46975516 ~ 46976186 (+) True G47684
TU59550 lncRNA downstream 310345 47147355 ~ 47156704 (+) True G47728
TU59597 lncRNA downstream 382909 47219919 ~ 47224080 (+) False AMCG00013927
AMCG00013913 mRNA upstream 43385 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013909 mRNA upstream 238091 46553031 ~ 46557951 (+) True AMCG00013909
AMCG00013904 mRNA upstream 391357 46393809 ~ 46404685 (+) True AMCG00013904
AMCG00013902 mRNA upstream 525223 46259978 ~ 46270819 (+) True AMCG00013902
AMCG00013901 mRNA upstream 578831 46215736 ~ 46217211 (+) True AMCG00013901
AMCG00013912 mRNA downstream 21630 46858640 ~ 46870713 (+) True AMCG00013912
AMCG00013918 mRNA downstream 173282 47010292 ~ 47012262 (+) True AMCG00013918
AMCG00013923 mRNA downstream 189475 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013919 mRNA downstream 200085 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013917 mRNA downstream 240850 47077860 ~ 47085038 (+) True AMCG00013917
TU59106 other upstream 854136 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 978087 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1435160 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1700373 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 3355344 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 232691 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 1411057 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1417284 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1431744 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1444053 48281063 ~ 48351285 (+) True G48026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006688 True 7128 mRNA 0.41 18 NC_007122.7 21910752 ~ 22094392 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_02507677_02545533.mRNA True 3183 mRNA 0.54 18 CI01000058 2507594 ~ 2546413 (-)