RNA id: AMCG00013914


Basic Information

Item Value
RNA id AMCG00013914
length 5286
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00013914
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46930575 ~ 46946388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTGCCCCGTGACCGCCCCGCGCCCCGTGTCCCCGGACTCCCTCCCCGGCCCCCCAGGACCCCCGTATCCACCCCCCACCCGCCCGGCGCCATGGCGTCCCGGATCGGCCTACGCCTGCAGCTCATGCGTGACCAGTTGCAGCAAGAGGAGCAGCGGGAGCGGGAACAGCAGCAGGCGGCTGCCCTGCACTACATGCAGCAGCGCATGCCTGTGCCGGCCACGCCCGCCATCAACGCCCCAGCGCACTTTCCCACGCCCATGCAGGTGCCTGTGGAGGTGCTCAAGGTGCAGACCCACCTGGAGAACCCCACCAAGTACCACATCCAGCAGTCGCAGCGGCAGCAGGTGAAGCAGTACCTGTCCACCACCTTTGCCACCAAGCAGGCCGTGCACGCCGTGACGGGGGTGCAGCCCTCGCCCCCGCCCCCCGGGCCCTCACCCTGCATGCGGACCGAGCAGCTCATCAACCACTCGGCAGGCAACAGCGCTCCCAACAGCCCCATGGCCCTGCTGAACATCGGCTCCAGCCACGAGAAGGAGGTGTGTCCGTCTGAGCTCAACAGCCCCGCGCTGAGCATGGACGAAGTCATCGATGACATCATCAGTCTGGAGTCCAGCTACAATGATGACATACAGGCCTATGTTGACCCCGTGGTTCAAATGTCAAACACACTGCCCCTGTCCAGCAGCCATTTAGATGTGTACGCCGCCCCTGGGGGCATCGCTGGCCCCACCATCGCCATGACCAGCAACTCCTGCCCCGCCAACCTTGCCATCAAAAGGGAAATGTCGGATGCAGAAGCCCGTGCTCTGGCAAAGGAGAGGCAGAAGAAGGACAATCACAACCTGATCGAGAGAAGACGGAGGTTCAACATCAATGACCGAATCAAAGAGCTGGGCACGATGATCCCCAAGACTAACGATCTGGACGTTCGCTGGAACAAGGGAACCATCCTCAAGGCGTCCGTGGAGTACATCAAGAAAATGCAGAAAGATGTGCAGAGATCGCGGGAGGTGGAGAACAACTTCAAGAGGATGGAGATGGCCAACAAGCAGCTGTGGCTTCGGATTCAGGAGCTGGAGATGCAAGCCCGGATGCACGGCCTTCCCAGCAACTCCCCCTCCGGGATGGGCCATGCGGAGCTGCTCAACTCCCTGGTGAAGCAGGAGACCAGCCCCGAGGAGAAGCCCTGCGTGGACGGCCTGCCCCCTCCCCAGCACCAACAGCACCCAccccagcagcaccagcagcacaCGCCTCAGCAACACCCGATGGAGAACCACCAGCCAGGGCCGCTGCAGTACCCATCAGTGGGCAGCTCCCAGCACTTTGACTTTGCGCAGACACTGGACTTGTGCGACAGCGCAGTGGGCTACCCGGACACCCTGTCCCAGCTCACCGACCTGTCCTTCACCTCCCCGGAGGGCAACAAGAAGGATCTGGGCTTCATGCTCATGGATGAGGCGCTGTCCCCGCTGGGGGGCGACCCGCTGCTGTCCGCCATGTCCCCCGAGGAGTCCGTGGACAGCAGCCGCCGCAGCAGCTTCAGCATGGAGGACGACATCCTGTGACACTCCCCCACGCCGTGCCCCACGCACACCCCTGCGAACCGCCAACCCCCTCTCCGCCGTAGCACTGACTGCActcgtttgtttttgtttttactttttacgtGCCCGTGTGTGCTTTTGAGTGTCCTCTGTAGGGAAaccgcacatgcacacacacacacacacacacgcacacactcgtacacacacagccaaagcagTACAGACACAGCGTCACTGCCCGCCAACCTCCGCAGTAGCAGACCCACTTTCTTTAACGCCTCATCCGTTGTTATCGCGCCTCGAAAACAGCGATTGATTTTACTGTTCCCACAGAAGTCGCTCCTTCCTGTGCGCCCCCGTGACCGCCTCCCAGTCAGGCAGTCGGGCGCGAATGAATGTAAGGCTTCAAAACTGAATTGagggaaatatacatttacgtttttagttttaattttttttttacaactggcagctttttgtgtttgtgatccGATAAGAGCAGGGAAGTCGTCCCGAGTCGTCCCACTGAAGTGATGGCCGCTCGAAGGCCCCTGTTCACGAGGTAGCTAGAGAGTCTCTCTCAGACCGACAGTATTGCCCCAATACTCGAGCTCACGTATTAGGTGGGTAATTCTCAGGACTTCATTCCAGAGAAAAGGGGTCTTCAAACACCCATCTAACTCCACATGTATTGATCCACGgtcaatacaattaatttattactgTGGTTAAATGCCACACTTAAAAAGGTGTGATCTTTATAAGGCCCTGAGGACTAAACCCCCGAAAATTACCAGGAGGCACAACACCTCTCAAAAGGGATTGATCTCGGTAGGACTGGTCTGAAACAGGGCCTTCAGTGACGTCAGATTTTTATCAGGTTGGTCTGGGTGCTGAGATACTTGTGCTGAATGATTTTAGCATCAGCAGGATGCGAAGCTATGCCAATTTAACATAGTGGCCAGTTTTTTAACTTATATGCctagaaatacatatttggactGTTTTGAAtagcatttatgtttttgtttttttctcccaaagcactggaaatgtaattttgtgttaaaaaatttaaaagaaaaaaaaaaaaagaaaagaaaaaagtttaaaaaaaaacaaaaaaaacctgcgGGCTTGTGTACACTGTTGAACCTCCGGATTATATTTGACttgcgtttttatttttgttttttattttattcctcaagtgacctttttttgtatttggaaatATTTAACCAATAACCCAATCCTGTTCACTCAGGACTGATGACCTCGTCCCAGAAACAGAGtcatgtatttgtaatttttacagtgattgttttgtttttgtttttttaaacatataggTCTTTTAAATCCAAAAAGAAATCCCAGATGAATGGTAATTCTTCGATTATATTCTGCTATAAATGAGCTTtgtgaatgtgatttttttgttagCCAACGTTGATAGTTTTGcaggttttgtttcagttcccacaatgcacctcgTACCGGTACAGCAACGGAGTCAGGGCTAGTTATAgcgcaataaaataaaaacacaaacatattccTCCACTGACAGATTTGCCCCATGCTGGTAGAAACTATAGCAGCATTAAATCACTCTGTTGAAGAAATAAATTCACAAAAAGCCCGTCAGCCAGTTAAAAATCACCTTCAGCAGCAGAGTGGACTTTTGTCTATTACTACACAATCTTGCCTATCCTTGTCAGATCCCCCCCCACCCGCGCTgacatgttttcttgtttttattcagcTTTCAATTGGACAGCTTCCTTTTTACCCCAGTGTTACAGCAATGCCTTCATCCACGTATGATTCCGTTCACATCAAATCCTCGACCGGGTGTTGAGAAGCAGTCTGACTTTGATCCTGCTGTACACAACCGTTCTGTCTTCGGGTTGTCTCTGCGTTGTTGTTGTAGTTCTTTTGGACAGAATAATCCCAGGAATGACAGGCTTGATGTCGAGCGCTCAGCCCGTGTCCCACCTGGACTGTATCGGTTGTTTAATCTGCAATTAATCTCAGTCCGGTGATACAGATTGCTTTTGTACGTTTATTTTGTACACCCTGCGTTTTGAAAGCTCAGAGGTTGTCTTTGCCTCCGGATGCAGTTGGGTCCTTCGCTCGGCAGGTTCTCCAGGTAGTGGACTGTTTTTCGCGGTGAAAACCTTAATTGCCGATGAGAAATAAAGCTGAGTCTTTGATCGTTGGTCTGGATTACCAGCACTGCGACCTCGTGATCCCGGCTCATACCGTCAGAACCTCATACTAGGAGAACATACTCAAAACCTGCCAATTAAAATATGGCATTGCTTTGTCTTTCCCTCCATCTTGCCGTGTTTATGCCAACTGACCCAATTGTTCACTCTTTCGAGGACACACTTATTTGCATTTCCCTCTGAATCACGTTTGTTAGTTTATAATgggaattaatacaaaataaatgcagagtAAAACTGAAAAACGAATCCATGAAAGGATATCTCAGGTACTTGCCTGGAGCAGCAGTGAGGGGAAGCGGCCAGCCAGGCTCTATGCAAGTTGTAGTGACACTGCTGATCCACAGGGGGGCAatatcaattaagcaattatggAAAGtgactttattttgttctgtatcaatgtatatatgaattCCCCTGCCTTTCTTCAGCTCGCGGCCTTGGTGTGTTCCTGTGCGAgttgtgctgtattttaatcctgtgtttgttgttttttgagcCCAATGTGACAGCTCTTACTAGCCCTGGTTCATGTCATGTCTGCCTTCTTTACACCTGCCCTCCTCAGCTCTATAGGACAGCTGACATTAAACGCTCTATTGCCTGTGgcgaaagaaaatgtattttaaatccaCTGTCTACTGATTGATTTCTCGTATCTGCTGTGTTCACTGCGGTACCCAGACCCCTCAATTCAAACTGTGAAAGAACGACACAAAACTGATCACAACCGCCTCACACGGccgacacatacacacaactcTGAGCGAGTCACTCCTGCAATATCCGATCACACATCACAGTCACTAACAGCCTAAATTCATACTGGACGGCCCACTGTTTTAAAGTGTTGCCATGTCAATAATAATGCGTGATTCTAAGCCCAGAATCCTTAGCAGCTGCCAGCTGATGACAGCCTCTCTGCAGTAGTGATTTAGGGAACAACAATCCATTGGATAGACCTAGAGTGTGGCGGGGGTTAACTTCTCAGATCACACAAACCCCCACACGGGTGCTGCAGGACGGTCAGCTGGCTCTCAGGGCAACACGTGCATAGACAAAGTGCAGAATGAGATAAAATCATGTTAAAGCACACCTGGCAAAAGCAAGGATTGTGATTGGCCGATGTAGGTTTGCAGTGGATGAAAATGACTTTTTGGACATTCCTAATTGATGGGGCGAAAAAAAGATCTTGTGCGCAAGAGAGTCGAAATGAAAGCAAATTTGGGTATTtgactaaaatgaaaaagacagtGGACTAAATACACCAAATTCTTAGTGTAACGCTGACTTTACAAACCAAACATGAATCAGTTCGAACACAGCAGATAAAATGCTTGGAAAATGAATtgtcttgtaaaaaaaaaacaaaaaaaaaaacattttgtatttatgtagtgtctggtatttattttttaatttatatgaaatatattttctttctggcAGAAAAATTCAGCTGTAACTTTCAATAAATGGTGCCATATTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K15590 TFEB; transcription factor EB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59468 lncRNA downstream 91811 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 627875 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 692061 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 1007661 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 1007705 45921106 ~ 45922870 (-) False G47391
TU59536 lncRNA upstream 111151 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 124955 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 279413 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 549023 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 594175 47540563 ~ 47545591 (-) True G47809
AMCG00013910 mRNA downstream 422858 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013906 mRNA downstream 465167 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013907 mRNA downstream 523644 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013908 mRNA downstream 540957 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013905 mRNA downstream 544334 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013916 mRNA upstream 23871 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013915 mRNA upstream 30303 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013920 mRNA upstream 48754 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013921 mRNA upstream 68668 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013922 mRNA upstream 78463 47024851 ~ 47026381 (-) True AMCG00013922
TU59474 other downstream 55205 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 767088 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 847033 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 956264 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 1006227 45923922 ~ 45924348 (-) False AMCG00013882
TU59572 other upstream 251955 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 918462 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1021037 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1871595 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1871595 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_02379628_02392648.mRNA True 2583 mRNA 0.45 9 CI01000058 2378584 ~ 2392780 (+)