RNA id: AMCG00013915


Basic Information

Item Value
RNA id AMCG00013915
length 3830
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00013915
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46976691 ~ 46985670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagagagagagagagagagagagagagagagagaggggagaggggagagggaggaagaaaaggagagagaagtttTTGAAGAGAGAAGACTGCTTGCAACTCCATACAGCAAGACAGGTACCAGAAGAAGGGTTCAGGACCATGAGGGCCCGCCTTGGATTATTTCTTCTGTTAAGCCTTCTCCTGATCGCTGCTGTATGGGGACAGGCGCCGAAACCGAGGCCTAGAAAACCAGGAGGCACGAGAAGACCCACCGCAACTCGTCCACAGCCCGTAGAGCCTGCTGAGCCCACAGACTTCCCTCCTCCCATCTTGGGACCCCCTTCCAACATACCCGGCTGCCCCAGGGAATGCTTCTGCCCCCCTTCCTTCCCTAGTGCCCTGTACTGCGACGGCCGCAACCTAAGGAAGATCCCGATCATCCCAGCCTGGGCCCACTACCTGTACCTCCAGAACAACTACATCGATGAGGTGACTGTGGAGTCCTTCAAAAACGCCACTGAGCTCAAATGGGTCAACCTGGACAACAACCGGATACGCAGGGTGGACCGCCAGCTGTTCGATAAGCTGCCCAACTTGCTGTTCCTGTACATGGAGAGGAACAACCTGAAAGAGGTGCCCAATGACCTGCCGCCCAACCTGGAGCAGCTCCGGCTCAGCCGCAACCAGATTTCCAAGATCCCCCCGGGGGTCTTCAACAAGATGGAGCACCTGGTTCTGCTGGACCTGCACCACAACAAGCTGGGCGACAGCGACCTGGGCAAGAACATCTTCAAGGGCCTCAAGAACTTGGTGCAGCTCAACTTGGCCCACAACATCCTGCGCAAGATGCCCCCCAACGTGCCACACAACATCTTCCAGCTGTTCCTGGACCGCAACAACATAGAGGACATTCCCCAGGGCTACTTCAAGGACTTCCACAACCTGGCCTTTGTGAGGTTGAATAACAACCAACTGACCGACAAAGGTGTGCCCAAGACTGTGTTCAACGTCTCCAGCCTCCTGGACCTTCACCTGGCCTACAACAAGCTGAGCAATGTGCCGGTCTTTAACCTGCAGCTGGAGCAACTGTacctgaacaacaacaacattgaaaAGATCAACGGCACAGAGATCTGTCCCTTCCCAGTCATGAGCATGAGCATGAGCATGAACGACGAGGACGCCATGCCCCGGCTGCGCTACCTGAGACTCGACGGGAACGCCCTGAAGCCCCCAATTCCCATGGACCTCATCATGTGCTTCAGACACCTGAAATCGATTGTGATGTAAAGGCTGGACTCTCCGGTTCGCATCTTGCCTTGACAGCACCCACGAATGTCACGGACTTCCGAGGAAATAacatcaacaaagaaaaaattTGAGCAGAATATTCTGCAGTCGTCACAGAAAACAGTCTGCATTCGTTCACGTGCTGATGCCTAgcaatcatatttattaatgtaaaaatcataataattaaaagaatggGGAAAAACCCTGCACAAAACAATACGGACTTCCTGTTCCAGCAGCACCACAAAGGTGTTTCACAAGCATggataaaaaacatgtaaatctttgttatttctttctgtcagtttgtttatagtaataattaaataaccacAATAATACGTGGGATACGCCTAAAAATAAAGGTACGTTAACAGCTGTGTTTTACAATGTAGTTACAGCTCACTAATACAGCTACAACTCCAGTGCTGTAGGGGTTAGAAGAGGAAATCTTTTCACCAGTTTCTGTTCACCAATGGCTTTTCCCCAGGTTAGGGAACTGCATCAGTAATATGTTGTGTAATAAACATGTAACTACCATGTAGTTAAGATGTCATTAATGTACCTGTATTTTAAGGTTatcttgtgtaaaaaaaaaaaggaaaacaaataggTTTATTTACCTTGTTTTATAGAAAGCAgtgttgttctttcttttgctATATAGGAGCTTTAAAAGAGAGACATTTTGGTATCATAGTTATTTATACTTTGGTATACTGCACTATAGTatactgtttctgttttttgtcaCAGTTGGATAAGAGATCCTTCAGCAGGATTCAATCCAGTATTTAATCAGTTCGGAAGAGAATTGGTTGCTTATGAAAGGAGTCTTCAGCGCAAAGTTCACCTGACATCTTTCACAAACCCTTGAACTGTGAGCAAACTCTGCGACTTTGACACAAGCAACTGTTCTGAGAAACTAAAGCACAGTAAGAAGCTAGCATTATGTCTTGTTTTATAgtgcaataacaaacaaaaaagattaaatattttacaaatgcgtgttttctttttatacttCCAAGCGGCGGATCAAATAACAAATGTTCACCACCATGTTGACGATCTTGTCAGTGCCACcgtaattgttttgtttctcgaTGCTCTGTCCGTTCCCCCCCCCCAGAGCTTATATAGTCTTACAGCCTTATGTGAAATCTcagtttatttaacaatttcattttatgtgGAAAATTGCTGTCAAAGAGGTCCAGATGATTGTCCTTCAACCATGAATGGACTGAGAGATTAAGGGAATCCCTTGACTTGAAATGCTACTGGGTTTCCTGGTTTCTGCTCCAATCCGAGTGGTGTAATTATGACAGATTAACACGGCCATTAGGGAGTGCTTGAAGACACCCATAGACTCGATGGATTGGGGCTCACGAGGACCAAGCGGTAAAGACAGCGGTCTTAGTAGAACCTGTCAGGAGTTCTACAATACAGTAATTGTACAATTTGATtcttccattaattaattaacattccATTTCTTGAACAGATCAACTTAATTACTCTGACTCTACAGCTGCATTACAGTTGCACATGAACGGCATTGAAATTCCCATATCTTCTATCTGACGGATTGGACAGTGGTTGGGTTTAGACCAACATACATCTGTGTTGTTTGTGCAATGAGCTGACAGCTTTTTGGTCAGGATCCAAACGGTAGCCTcaccaatacatatttaataaaactgtgtTAACTATTTTCACTGTTTATATTAACTGAGGTGAGACTTTATGTAGATGATTAAATAGTTGCGTTTTttaccattattaaaaaatctaaacattaaACTGGCCAAAGCATGTGCTACAGTTTTTTGACACAAGGATTTCACAATCTCCTGGAGAAAACCAAGTATGTCCATATGTCCAAaccaaatatttttatatactgaACTCAAAAATATTCCAGAGAGTGTTGCTCTGTACAACATCCTCTTTTTGTCAGCCTATGATCGCTTTCACTTGTGTCTGAATATCAGGGAAGGAAGGGCCTGGCTCCTCTGATAACTTCTGTCCTGGCAGAGCAACAGACATCGTTGCAGCTTCTCAAGATGCATCTTGCCACTCTCTTATTCTTGCTCTATCCATCAGGTAAGAATTATAAACATATAGCTGCAGCTGAATTTGAAAATAACACCAGTGACGGTGGGGGCTCActtaatggtttatttcatcCCTGAAACTCTTGCAACTTCCCTgtaatttattacaaattacagtgtGTTGGTACAACCTTAACAAATGCGTGGTTTCATGTCAGTGTtagatgtgtgtatgtctggTTCTGGTAAATATCTAATTTCATCAGAGAACATCAAGGAAACTTTAATCAGATTATacaagaaatgtgaaattaaaaagcaataacagCATGGCACACTGATCTCACAAAAACAGCTCAGCTTCTCAGCCAAGGGAATTTCTTAGATGTTTGGACTGGACGTTTCCGTcacttgtgttgtgttgattCCTTGatagaattatgtttttaatgcagttctATTAAACAGGGAGTTTACGTGAGTTTTGT

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59468 lncRNA downstream 137927 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 673991 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 738177 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 1053777 45921106 ~ 45922914 (-) True G47391
TU59536 lncRNA upstream 71869 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 85673 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 240131 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 509741 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 554893 47540563 ~ 47545591 (-) True G47809
AMCG00013916 mRNA downstream 501 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013914 mRNA downstream 30303 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013910 mRNA downstream 468974 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013906 mRNA downstream 511283 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013907 mRNA downstream 569760 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013920 mRNA upstream 9472 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013921 mRNA upstream 29386 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013922 mRNA upstream 39181 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013926 mRNA upstream 115909 47101579 ~ 47112942 (-) True AMCG00013926
AMCG00013925 mRNA upstream 165421 47151091 ~ 47162001 (-) True AMCG00013925
TU59474 other downstream 101321 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 813204 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 893149 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1002380 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 1052343 45923922 ~ 45924348 (-) False AMCG00013882
TU59572 other upstream 212673 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 879180 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 981755 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1832313 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1832313 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile