RNA id: AMCG00013916


Basic Information

Item Value
RNA id AMCG00013916
length 1856
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00013916
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46970259 ~ 46976190 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGTTCCAATACAGATGCTGGAACTGGAGAACTTCAACCCAGGATTGGCAGAGAGTGGCTACACGGTGGTGAGAGGCACTGCCGGCACAAACTGCCAGATCTTGTGCAAATGCAAACCGACAGGGCAGAGGAGGCCGGTCATCATTTGGTGCAAGAAGAACGGAGAAGAGCAGTGTGTGACCGTGCTGAGGACGGCCACCAACCTGCGATATGGACGGGTGTCCATGAAGGTCACACAGCACCGAAGCACAGTCGAAGCCTGGGTCAGCATCCAACCCCTCGAGGAGGGAGACGCGGGGGAGTATTGGTGTGGGTTCTGGGAACAGTACCCCGACGTAGAAATCATTGAGGTCAAAGTGAAGATCGGTCTCCAAGTTCGCGCAGCTCCAGGGGCCGCAGGTCAGCTGGCCCCTTCGCCTGCCGCGAACTACTCCACTGAGATCGTCACAGCGTCTGAACACAACAGAGGCGTCAACCTCTGGCACGTCCTCCCGGGGGTGCTGCTCGTAGTCACACTGACTCCCCTGGTTGTGGTGGGGGTTGTTGTCATCAGGAGGATGAGGAACGTGAGGAAAGTGGGTGATGCCCAGCCCCAGGATATAGTCACGGTGTGTAAgTCCCCCGGAGGAGGCGAGGATGGGACCACGGACATAATCTACGCAGTTCTGACACCTCGTCCTCGGGGTCTCTCTGAGGAGCCCAGATATGCCAACATCCAGCCCAGTCGGACCCCCGAACCCTCAGAATACTCGGTGGAATACTCGTCCATCGCGTTCTAGGCTGCTGGAGTGGACATTGACCAGAACCTCATTATTTAAGAACTGCCTGGGGGTACCTAGAAGCTTGTAGGAAAAAAGTGTGTCCCTCAAAACTGCGTTTAGATTATCTGAATCATCTGTGGTAATGGCTTTTCGGACTGATCCATCCCTCTTACCTTGCTAAGGCGGAGGCTGCAGCAGTTTGACAGTGTGCTTTATAAACAGCGCACTTCACAAACACGACTCCAGACACAATAATCATGTTTTCAGTAGAACAAGTGCACCGCAGCTGGCATGCTTCTCACAGGAGTCGTGCTTCTGATGAGGTGTCCTGCCTGCATCCAATGCTGTGCTGAAAGCGACCTCTTGTGGTGTTACACACACATTGCAGGTGATAAGAAGGCAATGCTGTAATCTACTAGCTTTATAGATAAGCATGCACTAGTATAAATAAAGTCAGAGCCAACGTTTGCACGATGAAGTCTCCTGCATTTGTTAGCAAGATGCACTGGGACAAACAGCCATGTTAGGATTGCTTGTTGACATTTGGACAGATTATTAAATTGACAGTTCTTGTGCCaaagttaaatatgtattattaacttctgtagtttattttgctAAGTATCTAGATATTGTTCTGTACACGAGACATCTCTGGTGTTTCTTTTAACAGAGGGCAGCAGGTATGCATACAGTAGTAGTCAATTTCCTGCTATAAGGTTAAGTAATTCCCCTGCAGGTTATCAAGACCATTATCTTGGCTGCTATGCAAATTGTCTGAAGTGTTCGCCTTGCTGACTCACTAAGCAGTACATCAATAAACTCTGGTGACTTAAACTGTGTGTGGAAAGGGAATGCCGTGCAGTGAGCAAATATTTGAACAGGCCTTCCACTGTCTGCTGGTAAAGAAACACCTGACTGTCATGATGTCATGCTGTAGAAGGGGCTCTTCTGCCACCTGTCAGAAACGAGGGAGCGATTAAAAGCACAGCACTGCTCTCCTGTGAAGCAGCACACTGACGCAGGCATGTAATGACCATGAGAGGcatgaaaaagacaacaaatgaTTAGTGAGTCATGATCTGTAGcag

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59468 lncRNA downstream 131495 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 667559 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 731745 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 1047345 45921106 ~ 45922914 (-) True G47391
TU59536 lncRNA upstream 81349 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 95153 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 249611 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 519221 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 564373 47540563 ~ 47545591 (-) True G47809
AMCG00013914 mRNA downstream 23871 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013910 mRNA downstream 462542 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013906 mRNA downstream 504851 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013907 mRNA downstream 563328 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013908 mRNA downstream 580641 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013915 mRNA upstream 501 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013920 mRNA upstream 18952 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013921 mRNA upstream 38866 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013922 mRNA upstream 48661 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013926 mRNA upstream 125389 47101579 ~ 47112942 (-) True AMCG00013926
TU59474 other downstream 94889 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 806772 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 886717 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 995948 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 1045911 45923922 ~ 45924348 (-) False AMCG00013882
TU59572 other upstream 222153 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 888660 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 991235 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1841793 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1841793 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile