RNA id: AMCG00013918



Basic Information


Item Value
RNA id AMCG00013918
length 1056
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00013918
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47010292 ~ 47012262 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAACTGGCCGCAATCCTCACAGTGGCGGGGCTGTTTGAACTCGCCCTGTGTCAGAGCCAAGACAGGTTCTTCTGGCTGTCCTACCTGCGCAGCCGCTGGTTCAATGGCCATTCCGGTCTCGACTCCAGACGCTTGGCTGGCCGCGACTGCCCCCTGGAGTGCGACTGCCCCCCCAGCTTTCCCATCGCCATGTACTGTGACAGCCGCAACCTCAAGCACATCCCCTTTGTCCCATCGCGGATGAAGTACGTCTACTTCCAGAACAATCGGATCAGCTCCATTCAGGACGGCGTCTTTGACAACGCCACCGAGCTCGTCTGGATCATGCTGCACCGGAACACGCTGAGCACAGACAAGATCGGGAAGAAGGTCTTCTCCACGCTGACGAACCTGGACAGATTATACATGGACCACAACAACCTAACACGGGTGCCCGCTGGATTGCCCAATTCACTGAGGGACCTTCGCTTGGACAACAACAAGATCTCCAAGATCCAGCCCAACTCCTTCGAGGGGATGCTCAACCTATCAGTACTGCTGCTTCACGACAACGCCATCCAGGAGGTCGGAGGGGCTCTGAAAGGGCTGAAGTCCTTGTCGCTCCTGGATATCAGCAACAACCAGCTGACAAAACTCCCGGACAACCTGCCCGAGCACTTGCACCAGCTCTACCTGGAGTTCAACAACATCACCACCATCCCTGGAGACTACTTCCACAGGTTCCCCAAGCTGCAGTACGTCCGGCTCTCCAACAACCAGCTCACGGATGAGGGGATCCCCCGCAACGCGTTCAACATGAGCAGCCTGATCGAGCTGGACCTGTCATACAACAAGCTGCAGAAGATTCCCCCGGTCAGCACCAGCCTGGAGAACCTCTACCTTCATGCCAATCAGATCAAAGAGTTCTCCATCGACAGCTTCTGCACGACGATTGACATCATGAATTTCTCACAGCTGCGAGTTCTTCGGCTGGACGGCAACCAGATCCCCCAGAACGCCATCCCCCCCGAAGTGGCCCTGTGTCTCCGCCTGGCAACCATCATTGCTGTGTAG

Function


GO: NA

KEGG:

id description
K08121 FMOD; fibromodulin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59494 lncRNA upstream 34106 46975516 ~ 46976186 (+) True G47684
TU59491 lncRNA upstream 38754 46969738 ~ 46971538 (+) True G47681
TU59479 lncRNA upstream 75515 46930467 ~ 46934777 (+) True G47669
TU59362 lncRNA upstream 539821 46419132 ~ 46470471 (+) True G47580
TU59322 lncRNA upstream 707423 46296633 ~ 46302869 (+) True G47546
TU59550 lncRNA downstream 135093 47147355 ~ 47156704 (+) True G47728
TU59597 lncRNA downstream 207657 47219919 ~ 47224080 (+) False AMCG00013927
TU59601 lncRNA downstream 219792 47232054 ~ 47248989 (+) True G47762
TU59611 lncRNA downstream 244235 47256497 ~ 47258758 (+) True G47767
TU59645 lncRNA downstream 394354 47406616 ~ 47407552 (+) True G47791
AMCG00013912 mRNA upstream 139579 46858640 ~ 46870713 (+) True AMCG00013912
AMCG00013911 mRNA upstream 173282 46796042 ~ 46837010 (+) True AMCG00013911
AMCG00013913 mRNA upstream 257635 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013909 mRNA upstream 452341 46553031 ~ 46557951 (+) True AMCG00013909
AMCG00013904 mRNA upstream 605607 46393809 ~ 46404685 (+) True AMCG00013904
AMCG00013923 mRNA downstream 14223 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013919 mRNA downstream 24833 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013917 mRNA downstream 65598 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013924 mRNA downstream 111446 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013927 mRNA downstream 209819 47222081 ~ 47227969 (+) True AMCG00013927
TU59106 other upstream 1068386 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1192337 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1649410 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1914623 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 3569594 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 57439 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 1235805 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1242032 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1256492 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1268801 48281063 ~ 48351285 (+) True G48026

Expression Profile