RNA id: TU59522


Basic Information

Item Value
RNA id TU59522
length 2725
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00013919
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47037095 ~ 47073708 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTGCCACTAACACGGCTCTCCCCTACAGTGTGATCTGGTCTACACCTTCTTCCACCCCCTCCCTCGAGACGAGAAGCCGGGAACTTTGGTCAACACCCTCCAGATCAAACCCGCAGAAGTGGCCTGGACCCCCCCAGCGGGGAAAGTGGTGGGCGAAGTGAAGCTGTCCATCTCCTACAAGAGCGACCGCCTGTTCATCATGGTCATGCACATCCGCGGACTGCCGCCTCAGGATGGCACAGACCCAGACCCCTACGTCAAACTGTACCTCCTCCCTGACCCCCAGAAAACCAGCAAGAGGAAGACCAAGGCAGCGCGGCGCACCTGCAACCCCACCTACAATGAGATGCTGGTCTATGACCGGATACCACGGGGGGACCTGCAGCAGAGAGTCATCCACCTGCGCGTGCTCGGCGAGGGGGCCTTCTGGGAGAACACGCTGCTGGGAGAGACCTTCATCCCCCTCAAGACCCTGCAGCCCGGGCCACACTGGGTGGACTGGCACCAGCTGGGAACTGGCGGGCAGGACTCCTCTACTCGCTAGAGAGAGAGGAGCGGACAGAGATGGACAGAAGgccaaggagagagagagagaatctgaGTGAGAGCGGTTAACccagattgtgtttgtgtgtgtgcgtgtgtgcgtgtgtgtgtaagtgaggTGAAGAAGCTGAGCTGCTTGGTCCTCAGGACTTGCCGAGTTATACCCCCAGTGGGGGTGTGATGAAGAGGTTTTCCTTCTCAGACCCCCCGCACACGTGGAGAAGCAGTGGTGGAACTCAATCGCGGGACGCTGCAAAGGCCGACGCGCTCAAACAGAGACCCAAGGTGTCGGAGCAAAGCTGTGTTTACAGATCCCCAATGCGATGGAGTGTCTCTGAACCAGTCGGCAGCCAGGGTACTGGCATAGAGAGGACATGTGCTTCAGACACGGGCCTACTCTAGCTGTCGTGGGACCACAGCGCTCTGAGATTCAGTGGGAACAAGAGTGGGGGGTTCTGGTCTGGGGAGGTGGAAGTAGGAGGTTGGTCCTCGAATGGAGATGGGCTTTGACGTCTTCCTCGACGCGAGAGAAGTATGTCTTCCCCATCTCTGTAGGGTCCAAAGCCATGCAGGGTCCGGCAGAGTGCAGAGCCACCAGACTTGGGACGAGGCCTGTGCTGATTGAGGCGTGCCCCCCCGTGAGGAcgtgaaaaactgaaacaagaAAGGGAATTTCTAAgttatttcttttttgatttGACCATTCTGTATTTGCTGCTCAGTTTGAGCATGTTCATActctacagtatatatttttatatatatactgtacttgATCTATACATAGACTGTACCTTAACTGTGTGTTAATTGTTCTGCCCAGTCTGGTGAAGAATGTAAGATGGGGTGACTGGTGTTGTACTGTAAGAGGGTACTTATGCCCAGTGAAATTATGAATTGGGCTACAGAGTGACTTCATTTCGTAGCCCAACTGGCTTTCGTTGACTCGTGGAGTCTTAACTTTTTCAGTTGTATATAGTTTGTGTAGATCCCACCCCCGTGTCCTTCTTAGATTGCTTTCCTCTAGTAGTTGTAGCATTAATTGAGTATTAAGTGTTGGGGGAAAAGCCACTAATTTGTCAAGGCCAGAAAATAACAGCATTGCCTACTTCTACACAAGTGCCCAATGATCAAGGTGAAGACTACAGTGGTCCAGAGTTTGGTTTTAAATGGAAGCATTTCAAATACTGTTCTAACGTGGCGTTGCGCTTACTGTTGCACTTTGGGGTCTGATTTGTCAAGcgtttttcagtttaaatgttgatgtgcttttgtttttgttgaaagaGGGGTAAATCTGACCTGTTGAtcatataacaataataaggaagccaacaacaacaacaacaacaacaacaaaatgaccTGAGAACGAGACAGTGGAGTATCCTCAGCAGTATGTATTATTGCCGCCATATGCTGCGCTTTTATGTTTACAGGGCATGAggaacaaattgtattttggtCCAGAGACCTTGACAAGTTAAATTCCCCTTCATTTTTCTCATTCTTTAATCTCATTAATGTCTCTTCCTCCAGGAATAGCTGGCTCGTGTATAGACCTCTCCAGTGTGATTTGCTCTCTCTTTGataaagacagacaaagacatTTTATTCTATCATCTTGCCCAATATGTCTAATTCTTACTGAAGATTATTTGATCATCCGTCCCCTGTTGGAGGACgtttttcaattttatatttcaatttcattacagtacatatataaaacaacctttgtacccctttttttttttggtctgcaCGAATCCCAAACTTACCATTCCAGAAGCTTTCACAATCTGTCACATGCCTTctgattactttattttattattttatattttatcccCCTGAGACTTGCAAAGAATGTCCACCTCGACCCACTTCAGAGCTAATAATGGCCTCAATCCATTAAGTAACTTCCGTTCCGTCTTTAAGAAAGCATCCATTTTTAATAGTGCTCAGATACGGAGTGTCTTTCTGCACTCAGTAGAAGGATTTGTGGAGTCCTAGGTGGCTTGGAAGTGTAgtggtggaaaaaataaaactaaccaTGTGAGTGCTGGCTGCCCACCAACATACACGGTGGATATCCAcactactaaaataaaaacagttttgggACCATGTTTTACGTTTGGATAGGATGTGTATTGGTGATTTTACAAGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59494 lncRNA upstream 93515 46975516 ~ 46976186 (+) True G47684
TU59491 lncRNA upstream 98163 46969738 ~ 46971538 (+) True G47681
TU59479 lncRNA upstream 134924 46930467 ~ 46934777 (+) True G47669
TU59362 lncRNA upstream 599230 46419132 ~ 46470471 (+) True G47580
TU59322 lncRNA upstream 766832 46296633 ~ 46302869 (+) True G47546
TU59550 lncRNA downstream 73647 47147355 ~ 47156704 (+) True G47728
TU59597 lncRNA downstream 146211 47219919 ~ 47224080 (+) False AMCG00013927
TU59601 lncRNA downstream 158346 47232054 ~ 47248989 (+) True G47762
TU59611 lncRNA downstream 182789 47256497 ~ 47258758 (+) True G47767
TU59645 lncRNA downstream 332908 47406616 ~ 47407552 (+) True G47791
AMCG00013923 mRNA upstream 42727 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013918 mRNA upstream 57439 47010292 ~ 47012262 (+) True AMCG00013918
AMCG00013912 mRNA upstream 198988 46858640 ~ 46870713 (+) True AMCG00013912
AMCG00013911 mRNA upstream 232691 46796042 ~ 46837010 (+) True AMCG00013911
AMCG00013913 mRNA upstream 317044 46743981 ~ 46752657 (+) True AMCG00013913
AMCG00013917 mRNA downstream 4152 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013924 mRNA downstream 50000 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013927 mRNA downstream 148373 47222081 ~ 47227969 (+) True AMCG00013927
AMCG00013939 mRNA downstream 467525 47541233 ~ 47543434 (+) True AMCG00013939
AMCG00013941 mRNA downstream 650726 47724434 ~ 47730274 (+) True AMCG00013941
TU59106 other upstream 1127795 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1251746 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 1708819 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1974032 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 3629003 43438492 ~ 43440698 (+) True G46945
TU59915 other downstream 1174359 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 1180586 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 1195046 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 1207355 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 1468234 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile