RNA id: AMCG00013920


Basic Information

Item Value
RNA id AMCG00013920
length 1624
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00013920
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46995142 ~ 47000214 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCAAATGTCTACCAAATGCTGAATCGGGAACAGACGAGCGATCGCTGTAGAATccaaaaaagaaggaaaaaaggaaagtcGAGCTCATCAGTAGTCTGGGGCCCTGGCCATGTGGGGATGTGGAATGTCTCGTCCTCAGGGTAAACACGGGCAGGGTCCCGGCACACAGACCCGCAGTGCAACGCCAACGGCTCGCTGGGAAGAAgctaaataattgaatacaagAGATACCTTTAAAACAGTCTATCTTTTGTTTCCACAGCAACAAAGGGAGTAAGACGAGATAGTGCCTCCTCGTGGACGTGGGAGACCTGATGGATCTGAGGAGCTTGGTGCTGTGCCTCTGTGTGCTGGGCGCGGACCAGTCTCCGGCCACCTTCATGGACTACGACTATGGAGGGGTGCCCATCACGATCAACCGGATGTTGGGGGAGCCCAGCGTGATGTCACTCAGGGGCCGCATTGATGCCGGCTGGCTCCGTACAGTCAACCCCCAGAGCTGCCCCCTGGAGTGCGAATGCCCCATACAGTGGCCCTCGGCCCTGTACTGTGACAACAGGGGCCTGAGATACGTGCCACCCACTCTGCCCCCACGGACTGAGTACCTCTTCCTGCAGGGGAATCGCATCTCTGGCCTCCCAGCTGGCGTCTTTAGCAACACCAGCCTGGTGCGCTGGCTGTTCCTGGATCACAACCAGCTGGCGAGCGACCAGGTGGCCAGTATGACCTTGGCACAGCTGCCCCGGCTCAAGAACCTCTTCCTCAATCACAACAACCTGACAGATATCCCCTCTCGGCTGCCCGGGGGCCTGAAGCAACTCCGACTGGCCCACAACAAGATCGCAAAGATCTCCCCTGAGGCGTTCGGGAACCTGCATAACCTCACCGTGCTGCTTCTGCATGGAAACCAGCTGAAGACCATCGGGGAGGCCGACTTCAAGGGTCTGCACTCCATCATCCTACTCGACCTCAGTCACAACCATCTCGAGGAATTCCCCAAGAACCTCCCGCCGTCCGTCAGACAGCTGTACGTCTCCAACAACTCCCTCAGTGCCCTCCCCGCGGGGTGCCTGGCGGGCTTCGACAGTCTTGAGTACCTCAGGATCAGCCACAACGGTCTCCAGGACAAGGGCATCGCTGAGGGTGTCTTCAACGTGTCCTCCATCGTTGAGCTGGACCTCTCCTACAACCAGCTCACATCCATCCCCCTCGTCCCAGAGAGCCTACAGTACCTGTATCTGGAGGCTAATCTCATCCAGGAGTTCAACGTGACCAGTTTCTGCAGGAGCGTGAGCCCGCTCCGTTTCTCCCGGATGAGGATTCTCCGACTGGATGGCAACAGGCTCTCGTACCATCAGCTGCCCCCCAACTGGGTACAGTGCCTCAGGGTGCTCAGAGCCATCTACGTCTGAACGACATCCCCTCTCACCTGCCCCTGCTGGTCACCAATGGGCTCTGACATGCCAGGATGAACtttaatatattgtgtgtttttttaattctacaaGATTTGCATAAAGCGAAAGCATGCAGCGTACAAGTGTAAGGTTACAAATTTGTAAATGCAGTATGCAAGCAAAGCCTTTTGCAGCcttgtggttttgtttcagaGAAAATATTCT

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59468 lncRNA downstream 156378 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 692442 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 756628 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 1072228 45921106 ~ 45922914 (-) True G47391
TU59536 lncRNA upstream 57325 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 71129 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 225587 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 495197 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 540349 47540563 ~ 47545591 (-) True G47809
AMCG00013915 mRNA downstream 9472 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013916 mRNA downstream 18952 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013914 mRNA downstream 48754 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013910 mRNA downstream 487425 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013906 mRNA downstream 529734 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013921 mRNA upstream 14842 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013922 mRNA upstream 24637 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013926 mRNA upstream 101365 47101579 ~ 47112942 (-) True AMCG00013926
AMCG00013925 mRNA upstream 150877 47151091 ~ 47162001 (-) True AMCG00013925
AMCG00013932 mRNA upstream 188381 47188595 ~ 47200867 (-) True AMCG00013932
TU59474 other downstream 119772 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 831655 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 911600 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1020831 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 1070794 45923922 ~ 45924348 (-) False AMCG00013882
TU59572 other upstream 198129 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 864636 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 967211 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1817769 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1817769 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile