RNA id: AMCG00013938


Basic Information

Item Value
RNA id AMCG00013938
length 4873
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00013938
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47552134 ~ 47564711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGACGCGGAGGGGCCTGTACGGCGGGTTCACGGCAGATACGCGGGATTGAGCGACGCCAGGGCGGATCCCCGGAGCAGACACACGCCGCGGCTGGTTCAGTTCATAAGTAAGATGTAGGACCAAGAACGAGCCGCGTACAGAACTATTTCACTGCCAGCCATGACGACCGCGTCAACCTCAGCGCAGCACCCAGTGTCCAGCCCGGCGTCCAGACTGCTGCCCGGGGAGGGGAGCCAGGTCCAGCCCAAAGCCCCACTCCTGCAGATTCTGCATGTCGCTGGTGCTCAGGAAGACACTTTCACACTGAAGGAGGTGATGCACTACCTGGGCCAATACATCATGGCAAGGCAGCTGTATGACAAGCAGAGGCAGCACATTGTCCACTGCCAGGACGACCCCCTGGGAGAGCTGCTGCAGGTGGGCAGCTTCTCCGTCAAAAACCCCAGTCCTGTCTACGAGATGCTGAAGAAGAATTTAATTGTTCTAAATTGCACAGACGCTGCAAAGACTCTTTCTGTCGCCAAGGATTCAAATCATGAGACGGCGAGCGAAGATCCCGGTCAGGAACGCTTGCTGTCATTTGGCCTAAACTGTGATCGCAGGGCAGTTCAGTTCCTGAAGAAATCTTTCACGGAAGAAATCAGATCATCATACCAGGATCCGTCAGGCAGAGTGGCACCGTCTCTGTACCTCCCCATCGCGGGGGTCTTCTGGTGGTTTGCGATGGAGAAACGGCCTGCTCTTCTTTCAGGAAGCCACCAGGGATTCCCGGCCGATGGGGGACAGAAATTCGTGGTTTTCGTCCTCGATGGCGGGTCCGGTTTGCTAACATGGCTCCTACTTCCTCTCTCCACCGACAACCAGACATCTAGCGGCGACTGCAAGCTGACCCAGGACCTGACGGCGGCGGGGACGGGCGCGTCCACGTCACAGTCTACCTCACAGCGCCGGCAAAGGGAGACCGACGGAGACTCCCTGGACGGCCTGCCCAGGTCTGCGTGCAAACGGCCCAAGCTGGACTTCAGTCTGGAAGAGTGGGACCTGTCCGGGTTGCCCTGGTGGTTTCTGGGAAACCTGCGCAGTAACTATGGGCGCAAGAGCAACGGCTCCACGGATATCAACACCAACCAGGACGAAGACACGGCCATCGTCTCAGACACGACCGACGACCTGTGGTTCCTGAACGAGGCCGAGAGCGAGCAGGTCAGCGTGGAGATGAAGGAGGCGGCCTTGGAgcgagggagtgagggagaggaggacGAGAAGGACACGGGCAAGGAGGACAGAGAGGCCCTGGCTCTCAGCAGCGCTGCGTGCCTGCAGTGCACCAGTTCGGCACAACGCGGTGCGCTGCAGAACCGTGCAAAACGGGCCCGTCTTGAGCCCGCCTGCTATCAGATTCAGCGCTCTCTCCGTGGCATTatgCAGGACAGTCTGGACGACGACACTCAGTGTCTGAGTGACGACACGGACACCGAGATCTCCACACAGGACGCCTGGCAGTGCACCGAGTGCCGCAAATACAACTCCCCGATTCAGCGCTACTGCGTCCGCTGCTGGGCGCTGCGCAAGGACTGGTTCAAGGACTGCCCTCGTCTCGTTCACTCCCTCTCGGTGCCAGACATCCCCGCCGGCATGGGGGCGCAGGAGGATGCAGAGGACGACGGTGTCGACGTGCCGGACTGCCCCCGCACGGTGTCGGACCCCGTGATCCTCCCATCCCACTGCTTGGAGCGGCCGCAGCCCCCGGGCAAAGGGAAGGGCCGCCTGCCACGCCACCTGAACCCCCGCTACTCGGGCCCGACCGGGGGCGAGAGCTCGGACAGCCAGGAGCTGCTGGACGAGGCGGCGGGGACGGGCAGCCGGCAGGAGGCCGTCCTGGAGCCGTGTAAGCTGTGCCGGGTGCGCCCCCGCAACGGCAACATCATCCACGGCCGCACGGGCCACCTGATCACCTGCTTCTCCTGCGCCCGCAAGCTGCACAAGGTCCACGCGCCCTGCCCGGGCTGCGGCCAGATCATCCAGAAGGTCATCAAGACGTTCATCGCCTAGTGCCCTCATGCGCTCCTCCTTTctacacatctctctctctctctctctgctcctgtACATTCACTTCCCTGTGTCTCtcattgctttttgttttggtttattgattaatttattttgttggacTTGATGGCACGCCTGGAATATGGTACagagatgtttttaatttaatttttcaataattaatatggacaacacttttttttttttttttttatgtaaagaaTCTggaaggtatttatttatttattgtggaaGCCTCCGATGGTTTTCTCGCTGTCCAGACAGAACAAACCGGCTGACCCTTCCCAACAGAAGCAAAACCCCCCCTTCAGCTTTCAGTCTGCATGTATTTCACCCCCGTAAGAGAGCAGTATTGAATTGACATGCTTAAAAATCAGTGCCAAAGatttgagtgtgtgagtgagtctgGTGGTGCTGATGGCTGTTCTCCAAAACTTAACTTTGAGGGGTGTGGTTGTCAGtcttgtgtaaatatttatctaTTCTTTACTGTTGGACAATTCTCACTTCCTGCCACTGGCTTTGCCTCCCCTCCCACCTCCGTGGCTGAGGCTGGCCACAACCAGACATCGCTCTGCAGCTACGCTGTGAGATCTGAGTGCGAGGTACAGGTTGCTTTCTGTGTGTGCATCGGACcaattttttaatattttttaaactaatagtGCTCCAGAATCGCTGCCTGAATCCGCAGTTTTGATCTCGTTGCTGTGCGTAGTTCCCCTGGACGTAGCGTCTCCCTCCCCGTTCCTGTGGGCAGAGTGTTTATTCTTTGTAACAAAGTGCTGATTAATTTGCCTCAATTGCTTGTGTTCTCTCACACCATCGTCGTTTAGTTTTATTTGGCTTAATTTGTGGCCCAGCGTGCCTGTGGGCGGCGGACTGTGAAGGCAGACTGCTCTGGTAATCAATACTGATTTGGCCACTAAAGACTCGCTTGTCCCCCACTTACAGTATGACCATTTGAACAGCTGGCGTTACCACGGGAGCTACCTTTCTCACAAGtcagatctctctctcacatgctGTCCTTTCATTAGTTTCTAGGTACAGActtggcagtgtgtgtgtgaagtgagAGAGAAGTCCAGGCAGCAGGGGTCagggttttatttgtatttatttctgctccCATCCCGAGCGGCTGCagagagaccactgcaattctGGAGCCATTCTAACTTAAGggaaagatggaaaacaagaacaacgacgagaagaaaaagaaagcttttCTCTGTGATCTCAGCCAGAACAGGTGTTCGCACCGGGACGCTGATAAGTCGGGAAATGTACAGATCTCCCGCAGACGTGACGGGAGTATTAAcggctatttattttttctgtataaaaGTGTTgtctttgtatatataaaagaaaataatgtatgtggAGATTTAGAAAATGAATCTGCTCTCTGAAGCTTCTTTAAAGAGTAACATAATGGGTGTCTAATCTCTCGCTCCGTGATGTTGACCGATCGACAGGCTGTTCTGTGCCGTATGCGAGTATCTCGCTTGCGCATGCGGCCGGCTGTGAAATCTGGCGTGCGTAGTTCAGATAGTGCCGTCAAGTTCCAGCAGGCTGTTTAATATGCAACGCTGTGCTTTTGTGACGCTtgtagggggggggggatataataataatccctgGGCTTATGTACTCGTTTAAATGAGTTAACCGACTCATTGTCTTGTGCTGTATGAGCCTGCTGTAGATTTTGATGAAGATGGGGatggcaggaggtggagggcagttGAAGCAGCCCCCGCTGAAGCCCGTTGAACCCCCCCCCGCCCTGATATCTATATCTAGTCGGTGTCTGTTCACGTACAACTTTCACAAATTCAGCGCCACGAGCAGTATTGACGAAATGCTGCCGTTTTGGCGGCGGATGTCCTGAACCACGATTCCACCTACATCCATCAGCTGTTGCACTGAAGGACTTTATTGAACGGAGCACTTGAATTCGCCAcagttatgttgtgtgtgtgtgtttgcttacTGTGTAACCGTTAAGGGCATGCTGCCGTGAGAGCGGCTTCAGCGCTGACGAATGCGCTTTGTATCTTATTGCCACATGTTTGACAACCTTTTACATGCGTTGCTTTGGTTGGTCTGGGTTCCTTTGCTATTTTCTGTTCCTGGTCAAGTTGACCCAGCACTTTTTCACAGCTAATTCTCGGCTCCAGGCTGAGAAGTTAATTTAGCACGGTTTTTATTACGTATCCGAGGACAGGGGTGGCAATAAGTCTTCCCGTGACAAAGCGCTGTCTTACCCGGACAGCTATGTGGGCCATGCATTTTTCATGATGGTAACCTTACTTTCATGATGTTTTCAAAGAGAGCCATGTGGACTTGCAGTACCGGCCCACTTATTTTCTCTGGTACAACCCAAACTGGAACGGCCTGCCATTTAACGGGAGTTTTATTGCGTTCTTGACTCTTAGGTGCCACACTATCCTGGCACGGACAGTATTTGGACCCGTTTGTGTCGAGCACCACACGGGTCTAGGTGTCTAGTTTTATTGTCTCATCCTCTGGATCAAAAGCTCAATCACTGCCAGTGTTTGTGACCCTGTCGGGGGAAAGGTCTTCCCTACAGGGCTCTTGAAATGTGTCTTATGTGTTGAAAATCATCACTGCcatattgaaaatgtacttgATTGTTTGACCCCGTTTGAGGGTGTTTGCTGGAAAATGAGTGCTAATCCTGTTTTGAACTTCCCAGTGTTTtctaaatatgtgtttaataaacaaaatacaccggctttgtttttgtttgtaattaattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59664 lncRNA downstream 6543 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 56450 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 324880 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 431533 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 477106 47071343 ~ 47075028 (-) True G47717
TU59711 lncRNA upstream 125134 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 402714 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 451850 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 614556 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 651164 48215875 ~ 48216209 (-) True G47995
AMCG00013935 mRNA downstream 120655 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013936 mRNA downstream 135752 47410368 ~ 47416382 (-) True AMCG00013936
AMCG00013934 mRNA downstream 184072 47323711 ~ 47368062 (-) True AMCG00013934
AMCG00013933 mRNA downstream 262093 47275671 ~ 47290041 (-) True AMCG00013933
AMCG00013931 mRNA downstream 277305 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013937 mRNA upstream 2392 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013940 mRNA upstream 18874 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013942 mRNA upstream 144502 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013944 mRNA upstream 284568 47849279 ~ 47857162 (-) True AMCG00013944
AMCG00013946 mRNA upstream 301281 47865992 ~ 47868234 (-) False AMCG00013946
TU59572 other downstream 351237 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 676764 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1388647 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1468592 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1577823 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 300139 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 402714 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1253272 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1253272 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1253272 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile