RNA id: AMCG00013939


Basic Information

Item Value
RNA id AMCG00013939
length 2202
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00013939
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47541233 ~ 47543434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTCCCACAGCCTCGGATTTGTGCAAGCCCACCTCCTCCTGGGTGTCGCCGGCGCTCTGGTCATTCATTCTGTGCCTTGGAAGGTGCCCTGCCCCCGGCAGTGCGTCTGCCAGATCAAACCCTGGTATTCCCCGCGCTCGGTGTACAGGGAAGCCCCCACAGTGGACTGCAATGACCTCCTGTTGTCTGAGCTCCCTGCCTCACTGCCAGCAGAGACTCAGACTCTCCGCCTGCAGAGCAACCTCATCAGTGCCCTGGACCAGAGCGAGCTGCAGGGCCTGGCCAACCTGACCGAGCTGGACCTCTCCCAGAACAGCTTCGGCAGCACCAGACATCTCAGGATCACCGACTTGCCAGGACTGCTGAGCTTGCATCTGGAAGAGAACCAGCTGAGACACCTTCCCGACTCGGCTTTCTCTGGCCTCTCAGGACTGCAGGAGCTATACCTGAATCACAACCGGCTGAGGAACATCTCACCCGGGGCCTTCAGTGGTTTGGATAACCTCTTGCGGCTGCACCTCAACTCCAACCGGCTTGTGATAATCGACCGCCGCTGGTTCCATGCTTTGCCGCAGCTGGAGGTCCTGATGATTGGAGGGAACCCAGTAGAGAGTATCCAAGACCTCAACTTTAAGCCCCTTGCTTCCTTACGCAGCTTGGTCCTAGCTGGGATGGGATTGCGCGGGCTGTCCGAGGGGGCCTTGGAAGGATTGTGTAGTCTGGAGAGCATCTCCTTCTACGATAACCACTTAACTAAAGTACCAAAGGAAGCCCTTCAAAAGGTGCCAGGCCTGAAGTTTCTGGACCTGAACAAGAACCCCATTGAACTTGTCCAGCCAGGAGACTTCAGAGACATGCTTCACCTGAAGGAGTTAGGACTGAACAACATGGATCACCTGGTCTCTATAGAGCATTCTGCTTTGGAGAACCTGCCAGAGTTGACCAAGCTTGAGATCACCAACAACCCCCGGCTCTCCTACATCCACCCCCAGGCCTTCCAGCGCCTCTCGAGGATGGAAAGTCTGATGCTCAACAGCAATGCTTTGAGTGCCCTGCACCGGGAGACAGTCCGCTCCTTACCTGGCCTTCAGGAGATCAGCTTGCACAGCAATCCTATCCGTTGCGACTGTCTTATCCGATGGGTGGGGGCCGAAGATGACAGACCTGTTCGGTTCATTGAGCCCCAATCTACCTTCTGCTCCGAGCCACCAGAGCTCAAGGCAAGGAGGGTGAAAGAAGTGTCCTTCAGGGAGATGGCAGACAGCTGCTTACCCTTGATTGCTCCTGGGACATTTCCTTCTCACATTCATGTCAGACATGGGGACAACTTGGCACTACACTGTCGGGCCTTAGCGGAACCAGAACCTAGCATCTATTGGGTCACACCTTCTGGTCAGAAGCTCTCACCTTCCACGAGTTCTGGGAGGTACCAGGTACTACCTGAGGGCACCTTGGAGATCTTTGGGATAACCTCGGAAGAAGCAGGGTTTTACACCTGTGTGGCACAGAACCTAGTTGGAGCCGACACTCGCAGTGTGACCGTCAGGGTGGATGGGATGGGCAAGGCCGTAATGATCAGCACCAGAAGAAGCAGTGATCACCTGGAGGTGAAGGAGGTGAAGGAACGCTATGCCTTGTTGTCTTGGTCTACTAGCAGAAATGTACCTTCGGCCAAACTGTCCTGGTTAGCCAACGGGAGCCTGGAGGACTATCACCCTCACAGCACGCGGATCCTGGCAGGAACCAGAGGGTTCAACCTGACCCGGCTCCAGCCCGGTACCCTGTACAGGGTGTGTCTGCACCTGGGCCCAAACGACACCTCCTGTCTCCATTTTAGGACTAAAGAGGTTTCAGCCCCGGCGACAACTCCTGATCTGACCCCGGCTGCTATCCTGGCAGCCTCTGCTCTGCTTCTCCTGTTGGCAGCCAAAGCCTGTCAAGGTGGTGCCTCGGTCAGCTGGCGAGGGGAGGATGAGGGGACTGAGAAACCAGAGACATCTCTTTTGCCCCCTGAAAGGGAGTGCTACATGGTCCTCTCAGCTGCCCAGCAGCAGTGCTCCAGTAAGAGCTGCACAGACAGCgacggcagcagcagcagagaggaAGGGAGCGCTGTGGGCTTGGCTCAGGATGCTCTGAAGGTCCACATTGTTCAGGGCCCCAAGGCAGAATTGTGCAGTGTCGAGcattcccattaa

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59652 lncRNA upstream 120004 47421016 ~ 47421229 (+) True G47797
TU59645 lncRNA upstream 133681 47406616 ~ 47407552 (+) True G47791
TU59611 lncRNA upstream 282475 47256497 ~ 47258758 (+) True G47767
TU59601 lncRNA upstream 292244 47232054 ~ 47248989 (+) True G47762
TU59597 lncRNA upstream 317153 47219919 ~ 47224080 (+) False AMCG00013927
TU59659 lncRNA downstream 1758 47545192 ~ 47545591 (+) True G47804
TU59667 lncRNA downstream 8725 47552159 ~ 47583902 (+) True G47810
TU59724 lncRNA downstream 208780 47752214 ~ 47819593 (+) False AMCG00013943
TU59832 lncRNA downstream 515299 48058733 ~ 48059592 (+) True G47936
TU59833 lncRNA downstream 516481 48059915 ~ 48060814 (+) True G47937
AMCG00013927 mRNA upstream 313264 47222081 ~ 47227969 (+) True AMCG00013927
AMCG00013924 mRNA upstream 409057 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013917 mRNA upstream 456195 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013919 mRNA upstream 467525 47037095 ~ 47073708 (+) True AMCG00013919
AMCG00013923 mRNA upstream 514259 47026485 ~ 47026974 (+) True AMCG00013923
AMCG00013941 mRNA downstream 181000 47724434 ~ 47730274 (+) True AMCG00013941
AMCG00013943 mRNA downstream 250505 47793939 ~ 47819723 (+) True AMCG00013943
AMCG00013953 mRNA downstream 542525 48085959 ~ 48097083 (+) True AMCG00013953
AMCG00013952 mRNA downstream 556242 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013951 mRNA downstream 601964 48145398 ~ 48158245 (+) True AMCG00013951
TU59522 other upstream 467525 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 1599327 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1723278 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2180351 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 2445564 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 704633 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 710860 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 725320 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 737629 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 998508 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile