RNA id: AMCG00013943


Basic Information

Item Value
RNA id AMCG00013943
length 5614
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00013943
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47752214 ~ 47819723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagcacagcagTGCCGACTGAGCCTGAGGAGACAGCGCTAGACTGTGCACCGCACACACAGACCCCCCCTCCGCTCTTCCCCATCCACTTCAAAAATTGGGACTCCAGCGCTCGCTGCAAAGCCAGAACTTTTACAAAAGACTGAGCACAAGAGAGAGgcacagaagaaacaaaactgctCCAATGCATCAAACCGTGGACTTTGCTCTTTTCAATTTGCATAGGTGAGCCAGATGAACACATACGAACCAGCCCACACTCTGTGCAAAGCCAAGGCTACGCATCTGTGCTTTTTGGTCCTCCTGTGTTTCCATTTGGCACTTGGGGATGTCCCAGGTCCATGCAAACACTCCGTGACGAGGGATCACCTGAAGAAAGTCAACAGTCTGAGCAACACTTGCTACGTTAAAGCAGCCTTTCCCAAAATCCTGGAGCTTCTGACCACGCACTTCAAATATGGCCAGAGCTCAGAAAACTTTAATTATGTGCAGGATATGAAAGCCTTGGTGAAGCACATTTACATACAAAGATGTATTCCTGAGATCAACCTGCAGCTGGAGGAAGATCCTGCAAAGTTTGTTCAAACTTACACCAGTTCTCCTAGAGAAGCCCTGGAACGAGTAAGGAAAGTGCTCTCTCTTTATATGGACCTGATGACCAACAGCAATGGGCCAGTGAACTGGAACTGTGAGGAGCAATACTCAGTGGAAGTCCCAGAATCTACCACCATCCTTAGCCAGTCCACAGCTGACAGGTTAGGTAGCCAGGAGCCTCACATGAACTCCATCTTGACTACAGAGGAACCAGCCGGACACTCAGGGAAAGGGGCCCAGAATGGCGCTTCAGAGGTCACGAATGCCACCTACAAGATCTCCTTCATTACGGTGGCTGTGTGCGGAGGACTACTGCTTACCATTGCCCTATACTGCTACTGGCAAAAAAAGAAACCGGAGGTTCAACTACACAGATCAGAAATGGAGAGGTTTGATGTTCTAATCCAGTGGACCAGCCGTAAAACTGGGCTGTCCTGCTCCCTCCATGCGGTCCGGGATATTCCACAGATAGCATCGGTGACCAACTCATCCGCGGACAAGAGACTTGGGAAAAACATGCATGAGAAATAAGTGGATTTACCAGTAGAGACTTTCACATCTTAGCCTGGATGCtctaaaaagaagaaatattatatataaataaatatatatatatatatatatatatatatataaataaatatatcaaatattaataaaggttatttttatacacaaggaacacattttttgttaaatagacaacatgaaTGAAGAAACAAGGGCAGGCAATGTAAAGgattaatataaatatctgtCTGGTACATTTCTTTGAAATCTGACGGCCCAGAGAGAAGAAAACTAGCAGTAAAGCACAGCTGGGTTTGTCGGGCAACTCCAGAGGAGGCTATCATTGTCTCTGAAGTGCCAACCACTGCCAGGAGCCTGATTCGACTAGCTCTCCTGCAATCTGACCGCCTGGATTAAAACAAGTCTCCCATTGCACTCGACAGAAGAGAAGAACAGAGCAAGAGCAATCCCCCCAGGGGCATGTACACAACTGGACTGTCATGCAAGAGTTCCTTATATTTAGAGAAAAGCAAAGTGCAGAATCATCCAGCCGTCTTCAACGTGACTTTGAAATCCACCCAAAATCTGACCTGCTGCGTTAGGAGCTGCTGCTGGCGATCAGACAAGCAGCTGTTCAGCTCTTCAACAGTCTTTGCAAAGACTGAAAGgactatatatgtatacatatacaaacactcacacacacacacccatacaaacacacacagacaaaaggcTTGGaactggaataaaatgaaactgtcaCAAGCAACACAAGAAACAAAGTCACTGCCTTTCAGGATACAATATTCAAATCCCGTCACTCTGCACTTTCCTGTTCTTacagtttgttatttttcttttctcagaaAGATACTTGAAAGAAACAAGTTACTAAAAAAGACCCAAACCATCAGAATTCAGGGCCCATAATGGATTTATATAAGCCACTGTAAATCATCCATCTCTAACGGTGAGTCTGACTGGTGTTAGAATTAAGTTAGACATAATGGgactttaaaaacatgaaaaagagtGATGTGGTTGTATTTGTGACTGTTAAGTGGCTTTGGAGACAGATGTCAGTCAAATAATAGTAGAAAAGGCAGTAGCACAAGAACAGCCAATGGAAAGCGCTAATACAGACTCTGCtgagaaatattaataatgctaccgattgcatttgtttaacattctCTTGAAAACTGCCAGTGTGTTCTCCGATACATTCATGAGCATTTTGATATGTTCATGCACTTAATCAAACCGTTGTGGACAAGTTTACATACCCATGATAGATAAATGGTTCATTTGTGTCCTGTAAATCGATAGTTGTTGAATATGCAATACTACGTCTGTTCTTATTGTTTTTCGTGTCTTCTAAAAATcaggattttatatttttgcagaaGGGTATTTAAACTAGTCCACATCTGTACATAAACACAATTAttctaaaacaattattatttgttaatataaattTAATGGCACCGTAAGTGTTACTATCAGCTGTTCCATTTGCTGTCTGTTCTGTATCTATTGCACATGTTAGATGTTTTCAAAAAGCAGATGTGCCTATTACTGGATTACTGGATGATGCCATTTGGTCCCTTAATCCTATTCAATATTCAAAGCATGTAAATAATTACTTCTACCAAGTCCGTTCCCATTTCATAATCCTGTTTCAGAGATAAGAGTCACTGCAGTAATGTAAGCAGTGTAGGAAAGCAACTTTGCTCAAAAGAAATCACACACAATTCTTGGAAATCATTAACTTTTCGCGCAGAGATTCAACATCTGCAACTATGGAATCCAGCTGTCACCCCCCTGCTgttaaacatctgtttaacacGTGAAACTGATAAATTAAAATTGGATTTAGCAATATGTACTTTAGAAAGGGGGATTGACTGAACTGAATGCATTTAATGacccatttttaattaatttatgaatatctctttacatgtgtgtgtggagggggaggggggagggttgttgtttagtttttaagtgaaaacaatgtGTGAGTGAAAGTGGGAATGCGGTCTGAATtaagattgtgtgtgttgtttgtaaTTGCATTCccgaacaaacaaaataatacatactcagttaaaaaaataaaaaatatataataattataataataataataatacaggcaAAGGATGAGTGAGACCCAGTGCCCAGTGGGACAATTAATTAGTTTCAGGGtagttttgcacatttattctctcaaaaggaaggaaaattaagtagaaaactgattttattcTACATGGATTCTCAGCACTGATGAGATATCATGAAAGTAACACGTTTCCTCAGCCTTTGCACTACGTCCTAttgcgttgttgttgttgcagtgaTGTGTAAGACCTGCGAAGCTTATAACATCTTCTTCCCCAACTTTAAAGCAAAGTTGCTACTTCAGCGTCGATAAGTGGTAGGGAAGGATGTAGTTTACCCTGTGAATGCAAAACAGAGCAATACTACTGCACAACATGTTATTTCTCCAAAAGGATACGAATGGAAATGCATGTTTAATATAAGAATCCAGGGAACACATCCAAACCGACTCCTAGACGCGACTTCccatcaaatgttttatttcaaccaCTAAACCGCGTTCATTAAGAAACTTCAAGTgtcaaggaaaataaacagcacatttgtacattaagcACATGATTTTGCAaactatatattgtattattattaacttatgtaaaatatatgtaaatagcTATGAAAGTAACTTTTGCAACATGTTTCGATTATGGAATTTTGatggtctttttatttttgcctttagCCTGATTTACACTATATGCATAGCTAAGTAAAACTTAAGTAAGTCGTATTGCAAATGTTAGACAATATATGCAAAGATCAGGAcaaattattcttataatatatttcaatatatgatCAACTTGTATACTGTGTATACCATCGATACAAATATCTTGCGTCCCATACCTTTCTCTGCTGAAGCCGAGGGGCGCAAAGTGAGGCCACACATAAAACCGGCGAGCGAAAAGCAGCGCTGCGTCTGCGCAACGTCTACCGGAAGTCAAATGTTGTGCCGGAAATCACGTACGCAATTCCAGGTTCATTATAGGACAGGAAGTTCATTAGCGTTGTGCTGCAAAGCGGTACTGCCTCAACGTGGTGATTTATCGCCAATACTGGctttttagaaatataaagcTGTGATAAAAATCTGCAGCTGCCatacaaactaaaacaatttgtaACTGACACGtttgtaatacaaaatgtaacagtcATTACACACCGTTCTTTAAACCAAATAATTTGCAcatcactttaaaatgtttattatatttggTTTGTAGCCTATGTATTTGCATTCAAATCTGTCACCAGTACAGCCCTGGAAAAAGGTGTTGTATAGATAGTTATTTTGACATTGTAGACGCTTTACCCGAATAATGACACTTACTGACAGGTCGATTCAACTTCTCAAAATAGCATGGATTTGATTGACACCCAACACACCTCTTGTCTGCGTCATTTCTGGCACAAGATTTGCCTGCCGGCAGTTCTCTCAGCGATGCAGCgctgcttttattatttgtaatgtttccaCCCCTTTTACTTCCATGGATGCAGCTCCTTTGCACCCCTCGGCTTCTGTATTTTACAGACTCAAGTGAGCAGCGGCTGCACATTTCGTATTTCGGATTCAGCctccaaaacaaacagcaccaGAAAGAGTTGTCAGGTGTAATTTAATCCGATTATTTTGTACAGTAGGTGCACGGAAAAAGCAGTCAAAACGATATATTATCCATGGTTTAAGAAATTCTGCTGGGCAGtcataaaaaaaaggaataaaaaagctTGCACTGGTTTTCCATCCTCTGTCAGTAAAAGGACTCACACGCTTGCTTTAGGTCTCTGGAGGAAATCCACTTTTGTAATTAGTTAACATTAGCATCACAGGAATAGCACAGGGCCTTACAACTGATgcaagagaaaatgttttacacatgttttatattattttaatatggcatTCTGTGTACGCTTTCGGCTTGTAATAAAAACTAGGCTAcagaatgtataaatatataagtgcTAATTTTTTCACACACATATGTGGAAACACCTTGAGGaggcagtggatcgatataggctgctGATGACCATATCCATTACTGTGGGGGGTGACAAGGGTCATTTTGGGAATCAATGGACCCTTCATAGTTTCAGTATTATAATCTGCAGACATTACTGACAGTCACTCTTTGCTGTGCCTTGCTGTTGCGCTGACTTCTACTACATGTTTTTCTATGTTCCCATTTAAGTGCAATGTGCTTAttcaataaatgcattaatgaacTAAATGCATGGTTGTTTGAAACTTCTTTGATCCCTTTTCTCTGATTATTCACAATCAATCACATTGATATTTAAAGTCTACTGTTCCTAAGCAAAAAGGTATTGCATCTACACATAAACACAGGGAGCGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59667 lncRNA upstream 210037 47552159 ~ 47583902 (+) True G47810
TU59659 lncRNA upstream 248348 47545192 ~ 47545591 (+) True G47804
TU59652 lncRNA upstream 372710 47421016 ~ 47421229 (+) True G47797
TU59645 lncRNA upstream 386387 47406616 ~ 47407552 (+) True G47791
TU59611 lncRNA upstream 535181 47256497 ~ 47258758 (+) True G47767
TU59832 lncRNA downstream 239010 48058733 ~ 48059592 (+) True G47936
TU59833 lncRNA downstream 240192 48059915 ~ 48060814 (+) True G47937
TU59854 lncRNA downstream 342488 48162211 ~ 48162427 (+) True G47958
TU59855 lncRNA downstream 344148 48163871 ~ 48164673 (+) True G47959
TU59856 lncRNA downstream 345072 48164795 ~ 48165036 (+) True G47960
AMCG00013941 mRNA upstream 63665 47724434 ~ 47730274 (+) True AMCG00013941
AMCG00013939 mRNA upstream 250505 47541233 ~ 47543434 (+) True AMCG00013939
AMCG00013927 mRNA upstream 565970 47222081 ~ 47227969 (+) True AMCG00013927
AMCG00013924 mRNA upstream 661763 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013917 mRNA upstream 708901 47077860 ~ 47085038 (+) True AMCG00013917
AMCG00013953 mRNA downstream 266236 48085959 ~ 48097083 (+) True AMCG00013953
AMCG00013952 mRNA downstream 279953 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013951 mRNA downstream 325675 48145398 ~ 48158245 (+) True AMCG00013951
AMCG00013960 mRNA downstream 407692 48227415 ~ 48234227 (+) True AMCG00013960
AMCG00013962 mRNA downstream 417040 48236763 ~ 48239245 (+) True AMCG00013962
TU59522 other upstream 720231 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 1852033 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 1975984 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2433057 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 2698270 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 428344 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 434571 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 449031 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 461340 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 722219 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile