RNA id: TU59752


Basic Information

Item Value
RNA id TU59752
length 1353
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00013946
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47864850 ~ 47868863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAGCAGGGATTTGTGGGATACCGGCACTCCGGCCCTGCCGAGCATCAGGAGGGCACCATGATCGAGGTCACAGATTTTCAGAGTGGGTGTGGGCCTCACGGGGTTCGGCCTCTTCTTTATCATGTTCGGGGTGTTGCTGTACTTTGACTCCGTCCTGTTGGCATTTGGAAATGTCCTGTTCCTGAGTGGCCTGGCTGTGATCATTGGCctgaggagaaccttccagttCTTCTTCCAGCGGCAGAAGCTCCGAGCCTCCACCTTCTTCCTGGGTGGCGTGGCCTTGGTGCTGCTGCGCTGGCCCATCATCGGCATGGCAGTTGAGGCCTACGGCTTCGTGCTGCTGTTTAGGAGCTTTTTCCCCGTGGTGTTCGGCTTTCTTGGGTCCTTCATAAACATCCCCTTCATGAACTCGctttTCACTAAGCTTTCAGGAAGCAGTAACACCATGGTCTGAaccaggaagtaatttgcagtgACAGAAGGTCAGAGACTTTGATCTGTTGCAGTGTCAGGATTTGctcacacattattattactttgagGTTCTAATGGATCCAGACATGCACtatttctgaatattcatgGACTGCTGAGAGAGACACCAGCGTGCGTTACTGTCATGACAAGTATGTCTGGACTGTGTGGCTGAAGAAGACTGGCTGATATCAGGAACCGTACCATCAAGACCGGGATTAGAAGGACCAAACTGGAGGCTGTTTTGGGACGTACCCCTCTTCGACATTTCTAATCTGCAATTTGACTCCTATCCAAATTAAATGTctgtatcaaaatatatattctttttggatgtaatgtattgttaaacaaaaaagaaatccatTCCTTGTTCATAGGTCACTGGTGTCTATAgctcatgcatttttaaagagctGTGGTGACGTCATGCAGAGATATAGGACAGAAAGGCTTGGAGAACGGCCCCAAGTAGGCATTTCCTCTTCAAGGCAGACAGGTTTTAATCCCCTAGTTTGTTATTGATAATTAAAGAGCCTGTTTTTTATGGCGCCTCTGGTCTGGGAGTGAGTCTGATTCATGCCTCGACGCCACCCCGGGGAGACTCTGGCGTAAATAGGAATAGTCTGGGGTCACCAACACAGCTCAGATTGATGTCAGTCGACTGTGGCTCAGTGAGTATGTGTGTCTGGTTTGTTACGTCATCCTGCGATAAAGACTGaagctccacacacacacacaaaaaaaactatttaaaaaaggaaattggaCACCTGTGTGACAATATGtcaaactgcactgcacacacagtccAGCTTAACAAATTGAACTGCACAGTGTGGTGCACCGTACTTGTGCGTGTTTCCGATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59711 lncRNA downstream 169956 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 319259 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 369166 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 637596 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 744249 47057539 ~ 47120601 (-) True G47718
TU59780 lncRNA upstream 98562 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 147698 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 310404 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 347012 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 400481 48269344 ~ 48270564 (-) True G48021
AMCG00013944 mRNA downstream 7688 47849279 ~ 47857162 (-) True AMCG00013944
AMCG00013942 mRNA downstream 148855 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013940 mRNA downstream 240892 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013937 mRNA downstream 293075 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013938 mRNA downstream 300139 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013945 mRNA upstream 562 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013947 mRNA upstream 110726 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013949 mRNA upstream 136836 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013950 mRNA upstream 153201 48022064 ~ 48024332 (-) True AMCG00013950
AMCG00013948 mRNA upstream 162529 48031392 ~ 48048066 (-) True AMCG00013948
TU59572 other downstream 663953 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 989480 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1701363 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1781308 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1890539 45963891 ~ 45974311 (-) True AMCG00013883
TU59777 other upstream 98562 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 949120 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 949120 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 949120 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1615637 49484500 ~ 49484767 (-) True G48373

Expression Profile