RNA id: AMCG00013948


Basic Information

Item Value
RNA id AMCG00013948
length 2791
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00013948
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48031392 ~ 48048066 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttttatgtttgaagACCTTGTCCCAGCGCGGTGCCTGGCCTGCACTTTCACCTGCTTGTGGCAGCTGTACCGTCCGTCACTGAGGCCAGATCAAGTGTCGGGACAGCCCCGCGGAGAAGCTCTCCAGCTGGGTCGGGCGTTCATAGCATACCCCGGTGTGTCGGCCCTCGCCGGAGCCCGACCATGCCCGTGTTCGTGGACGACCCGAATCGGCTCTCCAAGGAGAGGCTGCGGTCGGAGCTGGTGGCCCACAACGTGCCCCTGCCGCCGGGCGAGACCAGGAAGCGGGTGTTCGTGGACCTGTACCTGAAACACGTGGCGCACAGGACGGCTGCGGATTTCTCCAGCGACGAGGAGGACCAGGCGCCCGAGGACGGGAGTGAGGAAGCAGGACTTGAAGAGGAAGACGACGAAGGGGATTCAGAAGTGATGGACGTGCACCAGCTTACGGACGAGGAGCTCAAGGCAGAGCTGATAAAGTATGGGGTGAAACCAGGACCCATCCTAGCAACCACTCGACAGCTCTACGAGAAGAAGCTACAGAGACTGCTGCACCCGAGCGATGGACAGAAGGCCCCCCCCGACGAGGAGCACTACTCTGACAGCGAGGAGGATGAGACAGGTTCCGAATACCAGCCACACAGAGCTGCGAAAATGCCCCCAAAATCCGGTCCAGGACAGAATCACCTGGGGCCCAGCAGAGGGGGGAAACCCACGCCGGTGCTGACTGTCCATGTCCCCCGGCCCAGGAGTGGCCCCAGCAATGTGTGCAAGACTGCGCCGGACAGCATCCAGGCCCCCGTCTCTCCCTTAACCCCTCTGAGGAGCACCTTCTCTGGGCTTCCTGCAGGACCAGCGGTGAGCCCCCTGTACACGTCTCTGCAGGGCCTGCGGACCGCCAGCTCCCCCGGCTCCCCCGGTTCCTCCTTCAGCATCGCCAGACTGCTGGAGAGCCGGTCGCCATCCACTCCGCCGGCTGCTACAGAGAGATTGGACAGCGTGGGCAGCAACAAGACGGGCAGCGCGACTATGGTGAAGAGCCGGGGGGGTCTGATCATGCTGGACAAGAACACCATGACGTGTGGAACGCCGAACATCGCCCCCATGGCCTCCCGGGGAGAACGTTTTGGGGGGGTTCACGTCTCAGTGTTGCACACAGCAGGGGGGCCCGCGGAGGACGATGTGCTACAGGAGATGTTCCCCAATGAAGTGCGGACCCCCACAGGGATCAGcGCCACGCGTCGGAGGCCCATCAAGGGGGCGGCAGGGCGGCCTGTCCAGTTCAAGTACAGCGACCTGGTGCCCCTCGCCAGCTCGGGGGGCCTGGACAGTCTGGGGCTGTCCAGGCGGCTAGTCCCCATCTGGGCCCAGGTCCTCGTCTTCCTCCTGCTGGCCGGCTTCCTCTTCGTCCTCTACTGCGCCATGGAAGCCAACTCGGACAACCCCTTCACGGAGTACATCGACAACGCCAGCACGGGGTCGGAGGTCATGCAGGAGCCCCCCCCGGCGATGGATGCTCAGCTGCCCCTGACTCGGCAGGAGTGACTCAGAGACCAGCGCTCCCCCTCCCCAAGCTTCCCCCCTGGCAGGTCTCCTGGACTCGGTGTCTGGTTTCCATTGGACTTTGATTGTTCTCGGCTTCTCTGCAGTTGATGGCAGCCTCTGTgatgttcgtttgtttgtttgtttgaggtGTTTCTTCAGCCCCTTGTGTCATAAGATAACGGGGTTTGTGTgactttttataaataaaaggatattttttaatttgatatacaaAAAGTCACTTTAAATACGATGTGTCTCCACCCGTGGGGGAACCGGAAGTAGCTGGAGATATAGGGCACCCATGGACACTAACACACGGTTTTCACACAAACAACCCTGAGCGCGGCCAACCCGCAACGCCgcagctttcaaaagaacaggACGGCGCGGCATGGGTCACCAGGACTGCAGTTGGGACAAATAAGACAAAAGCCCTGTAGACTCCTGTATCGGGCAGAGGTCGTGGTGTGAATATTTATTACAGCGTCTTCTGTCttgatttttgtgtatttgataGCCGGCCGGGACTCCTGCATTTGGGAGCTCGGGGAACGAGAAGGCAGCGCTGACGAGCCTCCCACTCATGAGCAGAGTCTGCGTCTGTGGATCCTAATGGGACTGTCAGACTTCTCTGCCTCGCGGAGTCTGAGATTGATCCTCACGTTCCTAGGGGACCGAGAGGGTCCAGACCTGTTTTCACCACAGCCTGGCTGTAGCCACCTGGGCGATCTGATCTGGCACAGACGCCAGCCATTTACTGAATCttgatagttttgttttcttaagccAGGCAAAGAAACCAGGACACTCGttttaaaaaacatcttcagGGAAAATTCGGACCTTCAGGCCACGCAGTCGTCAGCCATAGTGTTCGTCCTGCCAACTCATAACCACAGAATGGACTTCGTTTACGTGGCATTGAATTGCTCTGATGGTTTGGGTTCAACCCTGCTGTCTACTTTCCTTTcccattgttttttattgacaGTTGATTCCCGATGCGTGTGTTATAGCGTTGGCGGGTCGTTGTTGAAGAGCTGAAGCCAAAGTCGAGCAGTTGAGAGGGAGGCTGTCTGAGCTCTCTGTCGCTGCTTTTAATGAACATGAGATGTGTTGTGGTGCTGATCtttatgcaaatgtttgttttgttttttagaagtGTGTTACTGTGTAGAAATGTGTGCTGCAAAAATATCTGAAGGCAAAGCTTTAATAAAGAATTAATTTGGTACATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59811 lncRNA downstream 14554 48016561 ~ 48016838 (-) True G47917
TU59780 lncRNA downstream 56477 47967425 ~ 47974915 (-) False G47896
TU59711 lncRNA downstream 336498 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 485801 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 535708 47495411 ~ 47495684 (-) True G47807
TU59896 lncRNA upstream 131201 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 167809 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 221278 48269344 ~ 48270564 (-) True G48021
TU59940 lncRNA upstream 228670 48276736 ~ 48277321 (-) True G48025
TU59981 lncRNA upstream 260498 48308564 ~ 48344493 (-) True G48044
AMCG00013950 mRNA downstream 7060 48022064 ~ 48024332 (-) True AMCG00013950
AMCG00013949 mRNA downstream 17141 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013947 mRNA downstream 30321 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013945 mRNA downstream 124226 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013946 mRNA downstream 163158 47865992 ~ 47868234 (-) False AMCG00013946
AMCG00013955 mRNA upstream 112608 48160674 ~ 48165662 (-) True AMCG00013955
AMCG00013954 mRNA upstream 125306 48173372 ~ 48176981 (-) True AMCG00013954
AMCG00013956 mRNA upstream 131829 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013958 mRNA upstream 138221 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013957 mRNA upstream 154513 48202579 ~ 48212028 (-) True AMCG00013957
TU59777 other downstream 56477 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 162529 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 830495 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1156022 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1867905 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 769917 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 769917 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 769917 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1436434 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1446661 49494727 ~ 49498630 (-) True G48392

Expression Profile