RNA id: AMCG00013953



Basic Information


Item Value
RNA id AMCG00013953
length 785
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00013953
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48085959 ~ 48097083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTCCCGGCTGCTGGGGGCAGGCAGACCAGAGACCCCAGGAGCGAGATCTGTAGGGGCCAAGATCGACATCCACACACAAGCCGGGGAAGATTTAAATTCATCGCCTTCGTATCTCAAACAGTGGACTTTCAGCCCCGAAAACTAAACCCTGATGAAATTGCAATCTGatacaattctgttttttttttgtttttttgtttttttagaaaacTTGCTCACTGAGAGGATGAAGGATGAAATTGGGTGGTTTCTGTTGCAGCGCTCCGGACAGGAGCCTCTACCAGGTCAGCAAAAGCTACGACAAGATATAATCAGACAGGAATGCCAAGGGGAACCAACTGGAATTTCAAACATCTTCCACCGGGAGGGGTTTAAAGGACAAGTCCAGCGCACAGGAAGTGTGAAGCTCTACGCCGAACAGGAAGTGTCAGAACGCAACGAGGAAAGCCCTGCAGGGCCGGGGCTGAGCTGCGCTGGAGTCTTGAAAGCCAGCTGCAGGATCGACTGGCGGTTCCAGCTGGGGATCAGGCGGTTACCTACAGAAATCCCACAAAAGCTGCTGTTACGTAAAGCACAGAGGCGGCCCCAGTCCAACGTAAACCGGGGATGGcaggaacaggaaACGGCTGGGATGAGGCGTACACCTGGCTTCGTCCTCACCGAGGGGCTGCAGAGTAATCAACACCCGAGCGCCATATGCTTCCCCGCTGACGGGGAGACAGAAGTTACAAGCGTCTGTGATCTGAGAAACCGAGCCTTTTCAGTTAACCTGAACACAGACATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59833 lncRNA upstream 25145 48059915 ~ 48060814 (+) True G47937
TU59832 lncRNA upstream 26367 48058733 ~ 48059592 (+) True G47936
TU59724 lncRNA upstream 266366 47752214 ~ 47819593 (+) False AMCG00013943
TU59667 lncRNA upstream 502057 47552159 ~ 47583902 (+) True G47810
TU59659 lncRNA upstream 540368 47545192 ~ 47545591 (+) True G47804
TU59854 lncRNA downstream 65128 48162211 ~ 48162427 (+) True G47958
TU59855 lncRNA downstream 66788 48163871 ~ 48164673 (+) True G47959
TU59856 lncRNA downstream 67712 48164795 ~ 48165036 (+) True G47960
TU59857 lncRNA downstream 71556 48168639 ~ 48169640 (+) True G47961
TU59870 lncRNA downstream 82108 48179191 ~ 48179721 (+) True G47972
AMCG00013943 mRNA upstream 266236 47793939 ~ 47819723 (+) True AMCG00013943
AMCG00013941 mRNA upstream 355685 47724434 ~ 47730274 (+) True AMCG00013941
AMCG00013939 mRNA upstream 542525 47541233 ~ 47543434 (+) True AMCG00013939
AMCG00013927 mRNA upstream 857990 47222081 ~ 47227969 (+) True AMCG00013927
AMCG00013924 mRNA upstream 953783 47123708 ~ 47132176 (+) True AMCG00013924
AMCG00013952 mRNA downstream 2593 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013951 mRNA downstream 48315 48145398 ~ 48158245 (+) True AMCG00013951
AMCG00013960 mRNA downstream 130332 48227415 ~ 48234227 (+) True AMCG00013960
AMCG00013962 mRNA downstream 139680 48236763 ~ 48239245 (+) True AMCG00013962
AMCG00013961 mRNA downstream 142617 48239700 ~ 48258433 (+) True AMCG00013961
TU59522 other upstream 1012251 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 2144053 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 2268004 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2725077 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 2990290 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 150984 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 157211 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 171671 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 183980 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 444859 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile