RNA id: AMCG00013955


Basic Information

Item Value
RNA id AMCG00013955
length 1765
RNA type mRNA
GC content 0.65
exon number 5
gene id AMCG00013955
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48160674 ~ 48165662 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGTTCTGTACCCTGGTTTGGGGCGGAGTGAGTTTGGCCGAGAGAACCGATACACGGCGATGATATGTTTGCTACAGGTAGCTGTCTGGGTGCCTGTGGTGTTTCCTGTTAACCGCACTGCACAGAGCGCAGGGCCGGGGGTCTCGCTCTCGCAGGGGCCTCACAACATCATCAAGAAGGTGAATGGGCAGAAGTTCGTGTACCGTTTCGTCTCGTACCCAGACATCCTGAGCGGGGAGGTGGGCTCGGCCGGCAGGGTGGAGGGGGCTGAGGCGGGGGagggcggcggcggcggcggcaccGGGGGGTCTCTGACCTTCTCCGAGAGAGGGGGCACCTCCAGGGACAAGGAGAACCGGGCTGGGGGGGAGAAAGGCGCTGGCTCGGGCAGACCGTCCAGTCGCAATGACTATATCCACTCGGGCCTGTACACCTCCTTCACGCTGACTTCGCTGCAGTCCGGCACGCGGCTCTTCAAGTCCATCAAGGTGGAGAACCCAGGCGAGAAGCTGGCTGAGAAGAAGGCCGGCCCGGAGCCGCAGCAGCCCCAGTCCGTCATCAAGTTTGGGACCACACCGTCTCGGAACCCGCCGGCGGTCGCCCTGGAGGTCGTCTCGCCGGCCCCGCCCCCCCAGCCTAAATGTGGCGGTGAGCTCAAAGCGGCCACGCCCCCTCCCCTGCTCCCGGCCCCGCTGCCCGTGGAAGAGACCGTGCCGGATGGCCCCTCCTCCGGCCCCGCCCCGTTCACCGACTCTGCCCTCTCGCCCTCCCTTTCCTCCCGCTCGCCCTCCCCCAGCAACGTCCCGGACTCGTCGCAGGAGCTGGTGATCGACAGCGACATCGAGTACATCTCCTCGCAGCCTGCCAGGGGGCCACTGCAGGAGGCAGAGAGGTCCCCTGCGCTGAGCAGCAGCAGTCAGAGCGGCAAGTCCAAGAAGCCCAAAGGCCTGGAGCTGACGCCCACCCTGGTGGTCACCAGCAGCGACTTCAGCCCCATCAACCTGGCCAGCCCCTCCCTGCCCACGGCCTCCCTCACCCCCGCTTTCCTTCAGACGCCCACCCTGCTGCTGACGCCCAGCCCCCTGCTGTCCAACATCCACTTCTGGAGCACGCTCAGCCCGGTGGCGCCCCTCAGCCCGGCACGCCGACAGGGGACACACACGCTGTTCCAGttcccGACGGTCCTCACCCCCCACATGCAGCTGCCTCTGCCCAACCTGGACGGCTCCAACACCCCGGGGCCGCTGTCCCCCGACCCCCAGAAGACATAGCGGACGGGCCTGCTCCCCCAGCTGAACTTTGACCCGAGGCCGCGGCACGTTAGGACGCTTCACAATAGATTGCAGCCGGCCTCGATGGGGGACAGGGGGTTACTGGGGAAAGAGACAATCGCGCCGGCTCTAATTTAACAAAATCTGATGTTTGGGTGCCAGAGCTGGGTCAGCCACTCTGTTCTAGAGGACAGATGTTTCGGGAGGTGTTTTTTCGGTGCTactgagagatagagagagagagggagggaaagagagagagggagagaggacgAGAGGACAGAGAACTCAGCCAGCCAAACCGACCACAGTGTTTTCAGATCTGTTGCTGCCGGGCTGCTCTGCCCTCGGGGACATCATCTGTACGTGGTGAGCTCGGTGGCACTGCTGCGCCGCTGTGACTGTGGCTGTGGAGGAGGCCGGGGCAGGAGCGGCAGGCCGGCTGATCGGGGGTTCTAGCGGGGGGGGTGCCTCGGTGCCGCGAGTCGGA

Function

GO: NA

KEGG:

id description
K04376 ELK4, SAP1; ETS domain-containing protein Elk-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59811 lncRNA downstream 143836 48016561 ~ 48016838 (-) True G47917
TU59780 lncRNA downstream 185759 47967425 ~ 47974915 (-) False G47896
TU59711 lncRNA downstream 465780 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 615083 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 664990 47495411 ~ 47495684 (-) True G47807
TU59896 lncRNA upstream 13605 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 50213 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 103682 48269344 ~ 48270564 (-) True G48021
TU59940 lncRNA upstream 111074 48276736 ~ 48277321 (-) True G48025
TU59981 lncRNA upstream 142902 48308564 ~ 48344493 (-) True G48044
AMCG00013948 mRNA downstream 112608 48031392 ~ 48048066 (-) True AMCG00013948
AMCG00013950 mRNA downstream 136342 48022064 ~ 48024332 (-) True AMCG00013950
AMCG00013949 mRNA downstream 146423 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013947 mRNA downstream 159603 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013945 mRNA downstream 253508 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013954 mRNA upstream 7710 48173372 ~ 48176981 (-) True AMCG00013954
AMCG00013956 mRNA upstream 14233 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013958 mRNA upstream 20625 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013957 mRNA upstream 36917 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013959 mRNA upstream 54570 48220232 ~ 48227111 (-) True AMCG00013959
TU59777 other downstream 185759 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 291811 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 959777 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1285304 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1997187 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 652321 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 652321 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 652321 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1318838 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1329065 49494727 ~ 49498630 (-) True G48392

Expression Profile