RNA id: TU59915



Basic Information


Item Value
RNA id TU59915
length 857
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00013961
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48239700 ~ 48258433 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAAGctatagtgtgtgtatacaggCACTACCGACACTTCCCACTACAAACAATGCCTTACTGTGCCATGGAGGTGCATGTGGCACCAACAGCAAGACACCCATCTTCAGAAGGGGAAggaaatggaataaaaaaagaaactgcagacaagaGCAGCTGACTCGTCTGCCTCCCTCAGATCCTTTTGTCTTCCTCCATGATGAATCTCCTCCTGGTTGTGGCTCTTCTGTCAGGTGCTCGCTGCAGTGCGATATGGGGTCCCAAGCAGGTGAGCAGTGCGGTGAATGGCACAGTGACGATACGGTGCGGTTATCAACCAGAATACAAAGACAAGGTGAAATACTGGTGCGTGGAAAGACTGCTGTTCCTGTGCCAGCCACTGGCGAAGACTGATGGCTCTGTGACAGACAGCAGTGTTTCCCTCAGTGAGGATAAATCAAGGGGAACGCTCTCGATCACTATGAGGGATCTGAGACAAGAGGATGAGGGCTGGTACGAGTGTCGGATACAGACCACTGAAGTCTCCATTGGTTATACAGCATCTGCCGTGTACCTCAACATCGACAGAGATGCCTCCATACCAGACCTTCAGGGTCCTGAGAACATCATTGGCCAGCTAACTTCAGAAACGACAATCCACTGTCTCTACTCTAAAGACTATGAGACTCACACAAAGTACTGGTGTCAAGGAGCCAGACGAAGGAACTGCAGCATTGTTGTGAGCACCGATTCCCCACAGACTCGAGGCAGGACTTCAATCAGAGACGATCAGACCCACAGAGAGTTCACCGTCACTGTCAGCGACCTCAGAGCCGAGGACGAAGGCTGGTACTGGTGTGGAATTAAGAGAACCTTNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59886 lncRNA upstream 41364 48206249 ~ 48206703 (+) True G47983
TU59884 lncRNA upstream 43248 48202526 ~ 48204819 (+) True G47981
TU59883 lncRNA upstream 45624 48200626 ~ 48202443 (+) True G47980
TU59880 lncRNA upstream 46812 48200626 ~ 48201255 (+) False G47980
TU59870 lncRNA upstream 68346 48179191 ~ 48179721 (+) True G47972
TU59921 lncRNA downstream 3066 48252779 ~ 48253145 (+) True G48007
TU59962 lncRNA downstream 84844 48334557 ~ 48346350 (+) True G48030
TU59964 lncRNA downstream 84844 48334557 ~ 48335268 (+) False G48030
TU60007 lncRNA downstream 136477 48386190 ~ 48386491 (+) True G48055
TU60012 lncRNA downstream 155890 48405603 ~ 48405818 (+) True G48060
AMCG00013962 mRNA upstream 8822 48236763 ~ 48239245 (+) True AMCG00013962
AMCG00013960 mRNA upstream 13840 48227415 ~ 48234227 (+) True AMCG00013960
AMCG00013951 mRNA upstream 89822 48145398 ~ 48158245 (+) True AMCG00013951
AMCG00013952 mRNA upstream 104150 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013953 mRNA upstream 150984 48085959 ~ 48097083 (+) True AMCG00013953
AMCG00013963 mRNA downstream 168544 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013969 mRNA downstream 240831 48490544 ~ 48494312 (+) True AMCG00013969
AMCG00013970 mRNA downstream 253456 48503169 ~ 48504611 (+) True AMCG00013970
AMCG00013971 mRNA downstream 284173 48533886 ~ 48546200 (+) True AMCG00013971
AMCG00013968 mRNA downstream 297541 48547254 ~ 48572929 (+) True AMCG00013968
TU59522 other upstream 1174359 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 2306161 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 2430112 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2887185 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 3152398 45034772 ~ 45095669 (+) True AMCG00013838
TU59923 other downstream 4581 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 19041 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 31350 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 292229 48541942 ~ 48545128 (+) False AMCG00013971
TU60104 other downstream 505240 48754953 ~ 48760712 (+) False G48142

Expression Profile