RNA id: AMCG00013962



Basic Information


Item Value
RNA id AMCG00013962
length 477
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00013962
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48236763 ~ 48239245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCCAGTGAAGACTGGAGAGATAGGGGTTTCCCTGACAGTGCAGTGTGACTACATCCTCGTTAAATGCTGCTGCAAAGGAAATGTCCAAATCTCCTGCAAGATTGTGTCAACAACTGATGGAGGCAGTTTGCATCAGAACAGGGTGTCCATTTCGGATCATAGAGCTGGGCTGGTGTTCACTGTAATCATGCGCAGCCTGCAGTGGAACGATACGGGTTTGTACTGTTGTGGCTTAGAACAGACAGGACTGGATATGATGCAACAAGTGCTGATACAAATCACTGAAGAGGCCAAATCTCAGCCCAGATACAGAGGCGCGGGCACAAGGAAAAGAGGAAGGAAAGTCAACGTGCGAAAACAAGAGGCAACCCAGAAAGCACCCAAGATTGACATTGTTTTGTACACGGGCTGCAGACTCTTTCTGTCAGCGCAGTCCAGCGGCACAGCATCTCGGCAGAAGCCCGTCACCTGCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59886 lncRNA upstream 30060 48206249 ~ 48206703 (+) True G47983
TU59884 lncRNA upstream 31944 48202526 ~ 48204819 (+) True G47981
TU59883 lncRNA upstream 34320 48200626 ~ 48202443 (+) True G47980
TU59880 lncRNA upstream 35508 48200626 ~ 48201255 (+) False G47980
TU59870 lncRNA upstream 57042 48179191 ~ 48179721 (+) True G47972
TU59921 lncRNA downstream 13534 48252779 ~ 48253145 (+) True G48007
TU59962 lncRNA downstream 95312 48334557 ~ 48346350 (+) True G48030
TU59964 lncRNA downstream 95312 48334557 ~ 48335268 (+) False G48030
TU60007 lncRNA downstream 146945 48386190 ~ 48386491 (+) True G48055
TU60012 lncRNA downstream 166358 48405603 ~ 48405818 (+) True G48060
AMCG00013960 mRNA upstream 2536 48227415 ~ 48234227 (+) True AMCG00013960
AMCG00013951 mRNA upstream 78518 48145398 ~ 48158245 (+) True AMCG00013951
AMCG00013952 mRNA upstream 92846 48099676 ~ 48143917 (+) True AMCG00013952
AMCG00013953 mRNA upstream 139680 48085959 ~ 48097083 (+) True AMCG00013953
AMCG00013943 mRNA upstream 417040 47793939 ~ 47819723 (+) True AMCG00013943
AMCG00013961 mRNA downstream 455 48239700 ~ 48258433 (+) True AMCG00013961
AMCG00013963 mRNA downstream 179012 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013969 mRNA downstream 251299 48490544 ~ 48494312 (+) True AMCG00013969
AMCG00013970 mRNA downstream 263924 48503169 ~ 48504611 (+) True AMCG00013970
AMCG00013971 mRNA downstream 294641 48533886 ~ 48546200 (+) True AMCG00013971
TU59522 other upstream 1163055 47069701 ~ 47073708 (+) False AMCG00013919
TU59106 other upstream 2294857 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 2418808 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 2875881 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 3141094 45034772 ~ 45095669 (+) True AMCG00013838
TU59915 other downstream 8822 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 15049 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 29509 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 41818 48281063 ~ 48351285 (+) True G48026
TU60059 other downstream 302697 48541942 ~ 48545128 (+) False AMCG00013971

Expression Profile