RNA id: AMCG00013964


Basic Information

Item Value
RNA id AMCG00013964
length 3485
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00013964
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48366043 ~ 48375096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGAGCAGAGTTTGAGTGCAGGAGCTCTCTTCACCCGGGACAGAGGACGACTCCACTGGACAGCACAGGGGTCTAAGGTGGTCCGACTCCTCGTCactgacagagagcagaaggaCAGAACTGACGCTTCAGCGATGGGTGTGGAAGAGACACTGCGCTTACTGGGGGCCACTCTGCTCCTCCTGCCTGGTGTCCTTGGTGGGAGCTGGGCTGTGTGGTATCAATCTGACAAGATCTGTGCTGTGAGAGGCTCCTCTGTGGTCCTGCCCTGTTCATATGATTATccttatgataataataattataattataaatatgaagTGCAGACAGTGATGTGGTGTCACAATAATAGGGACTGTCTTGAATCCTCATATGTGTATCACAGTGGAGGGGGTTCAATCAGCCCTGAATACCCACACAGAGCAGAGTACCTGGGGAATAAACAGAAGGACTGCACTTTGAAGATAAAGGACGTAAGAACAGCTGACAGAGGAGAATATAGATTCAGATTTGAAACCAATCATCCTGGAGGTAAATGGGTTGGTCGGACTGGAgtgactctctctgtctctgAGCTACAGGTGAAGATGAACTCATCAGGAGTGAATGGGACAGTGAGAGAAGGAGACGCTGTGACCCTGACCTGTGACACAGGGAGCTGCTcttccacacagacacagatcacCTGGTTTAAGAATGGCCGGcccatctctcacacacagacacccgccaACACACTGCGCTTGAATCCTGTTTCCTGTACAGACTCTGGAGACTACTCCTGTGCTGTAAGAGAGTATAGAGAGACCCGATCTGAAGGGTTCACTGTGGACGTCTGCTCTGAGTGGGAGACAGTGCTGCTGCCAGCTGTCCTGGGGAGTGCGCTGTCCGTCTGTATTATCACTGCAGTGATTCTCGTCTGTGTCAGAAGGAGGAAGGCTGGTCCATCTGCAGAGGAGAGCAACAGAGACACAGCGGCTCCAGTGAAGGAAGCTACAGGGGACATATACAGCAGTGTGGGCCCATCAGACACCCCAGAGAGAGGACAGGACCCCAGCGCCCCAGCACAGGGGCGGGACGACCTCAACTACGCCACCGTTCTCTTCCAGTCAAAGACAACAGCCAGGCAAGTCTCCAGCTCTCTCTGTCACCATCagggcctgtctgtctgctctaGAAGGACTGTAGCCTCCAGGAACGAACCAGATGACCCCTCAGTTGTCTACAGTGTGCTGAAGAGGCCAACAGAGTGACGGGCTCCATTACATTTCAGGAGAAGCATCTGGACCCTAATCCCACCCTCACCACACTTAAGTACAGGAAACCctactttcccagcattcatcacTTCTCATCCCTGCATTCTCCACCAGCATTGCGGCAAACTCCCTGGCTATTCCAAACTGGGGAGGGAGGCCGGGTCCGATGCCTCGTCCACATGGCCAGGCCATCGACAGATCTACACACACTATGACACTCCATCCTTCAAAGTCTTGTCAGGTTTCCGAAGTGAATTCCCTGCAATCTGCTGTGCGTGGAACTGAAACGTTTGTGTAAAACTCACAGGTCCTGAAATGATCTTTTCAGCCCAGATGATGCAGCAGAAGCTGAGTAATTGAGCACAGTTGCCTCTTGAGACATGAGAAGTTGCTCAGGGACCAAAACTTATTTAGTTCAGAGCCTGATTAGGCTTATCAGGGTGGCAGGGCTGGGACTGATGCTCTGATGAATATGTGAAACTGCAGACGATCACAGAATATTATATTTGCTTTAATATTGGAGATGgtattttgtgtgtaaaatattatgggctggtatttatttttaggttatTTTGCTAACAGTTAATGCAAGAGAAGGATTCCTTTGTAaagatatatattgttaaattgAATAAACTTCAAGTGCAATATGTTTGACACacatttttgatattttgtaaatttgatcaaataatatgtattttaaagcagattttaaaattatttaattgcaaaacgATTTAACTCTGATCTGGGAAGTGTTGGATGCTGGGAGTTGTTGTTTCAACACATATATATGTTGAATGTATCATTGCACATTGCACAGCTGTTCtacttgtgttttaaatgtctttctgatAAGATTAGTAGAGGAGTCTTCACCAGCCTTCATGTTAATGACTGTAAAGAGAGGACAATCCGATGACCATTTAAGGGGCTTTGTCAAAATTGATGACACATTCTTGTGTTTGACTGTTCAAGAGGGCTATTAGAGGAACACTATTCCACTTTCATAGATTATACAGTAAAAATATAGTAGTGCCCTTAGACTGTGTGTGGGGACTGCAGTGTTTATCCGTCTGCAAGGTCTGTGCGTTGGGGGGTGGGGCACATCGTTTGGGTATCTGATATTTTGCCCCATCTCTTCATGTGGTAGCACTAGCTGACATTTGCTGACACAAAACACCATCTGTGTCTAAAACCAGTTTCTTCCATTCCCACAGAAGCACTCTAGTCCTTAAACTAAACTCTTTGATTTCACTTTCactgtttcttttttgctgaCTATTGAATTCCATTGCTGGTCTATGTCGGTGTCCTCTGTGTTCTGTATATTAGCAGTCACAGAAAAAATCCAAGGCAAATATTCTTCCTCATTTACTCCAAATGCCTTAACAGCAGCCTTAATAACTTCTAAGGACATTTCTTCTGTACAAGTCTCTATGAACTCTGCTTCTAACGACAGTCTGGACAATACCGGACGGTGAAATTGAAATCAGCCAATTCAGCTACCAATTGATGGTGTTAATGTTCTGGACCCATAGGCTATCACTCTCATGTTACCCTCCTTATGTTGAGAAAGCACTGCGCTTATCTCCTCCTGGGATGTGTCAGTATGCAGAGTAAAGACAGGGTACCCCATTACTGCAGCAAACAATCAATTCGACTATTCAGAACTAATTGGTGATGCTCTGTCCACTGAACTGGTTGGGACTTCACTACCCAGGATCCATTCTGCCTTTTCTGCCCTTTAGACACTTTGCCCTTTTCTGTTGATGAATGTGCATTTGATGGTACCCCCTGCCCCAGTTTCAGGAGCTCATATAATGGCTATGGAATTCTAGAGAAAACCATTATATACTGTCTATAACATCCCAGAAGCCCTGagatctttttgttttaatgtctgAACCGCAGCTGTGTCTGCAGGGTATATTTTACTGCCCTCTGCCGACACAATTCTCCCCAAATATCTGATTTCTCTTATAAACCAGTCACATTTAACTCCCACTGCTTAACCTTTATAACACCTGTCTGATGTGTTCCTCAAATGACTTGCTGTAGACCAGCACATCATCTAAATCTCTCAGGCCTTTTAAACATTCCCCCATATGTAACCCCTCTACTAAGTatggcatttttttcttcttttacaaAATGAAGGGGTTAAAATGGTTagaaaattgttttattgctgtttgaaagttaataaatgaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59981 lncRNA downstream 21550 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA downstream 26433 48329718 ~ 48339610 (-) True G48047
TU59940 lncRNA downstream 88722 48276736 ~ 48277321 (-) True G48025
TU59936 lncRNA downstream 95479 48269344 ~ 48270564 (-) True G48021
TU59908 lncRNA downstream 149834 48215875 ~ 48216209 (-) True G47995
TU60036 lncRNA upstream 86430 48461526 ~ 48498711 (-) True G48082
TU60040 lncRNA upstream 95237 48470333 ~ 48472932 (-) True AMCG00013967
TU60041 lncRNA upstream 104352 48479448 ~ 48484310 (-) True G48086
TU60047 lncRNA upstream 130775 48505871 ~ 48506136 (-) True G48092
TU60061 lncRNA upstream 170141 48545237 ~ 48546275 (-) True G48106
AMCG00013965 mRNA downstream 101670 48261347 ~ 48264373 (-) True AMCG00013965
AMCG00013959 mRNA downstream 138932 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 154015 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013958 mRNA downstream 176741 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013956 mRNA downstream 185466 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013966 mRNA upstream 53807 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013967 mRNA upstream 80807 48455903 ~ 48479577 (-) False AMCG00013967
AMCG00013972 mRNA upstream 141837 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 147454 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013974 mRNA upstream 210535 48585631 ~ 48588321 (-) True AMCG00013974
TU59777 other downstream 391128 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 497180 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1165146 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1490673 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2202556 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 442887 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 442887 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 442887 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1109404 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1119631 49494727 ~ 49498630 (-) True G48392

Expression Profile