RNA id: TU60003


Basic Information

Item Value
RNA id TU60003
length 2291
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00013964
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48366043 ~ 48375096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGACTGTAGCCTCCAGGAACGAACCAGATGACCCCTCAGTTGTCTACAGTGTGCTGAAGAGGCCAACAGAGTGACGGGCTCCATTACATTTCAGGAGAAGCATCTGGACCCTAATCCCACCCTCACCACACTTAAGTACAGGAAACCctactttcccagcattcatcacTTCTCATCCCTGCATTCTCCACCAGCATTGCGGCAAACTCCCTGGCTATTCCAAACTGGGGAGGGAGGCCGGGTCCGATGCCTCGTCCACATGGCCAGGCCATCGACAGATCTACACACACTATGACACTCCATCCTTCAAAGTCTTGTCAGGTTTCCGAAGTGAATTCCCTGCAATCTGCTGTGCGTGGAACTGAAACGTTTGTGTAAAACTCACAGGTCCTGAAATGATCTTTTCAGCCCAGATGATGCAGCAGAAGCTGAGTAATTGAGCACAGTTGCCTCTTGAGACATGAGAAGTTGCTCAGGGACCAAAACTTATTTAGTTCAGAGCCTGATTAGGCTTATCAGGGTGGCAGGGCTGGGACTGATGCTCTGATGAATATGTGAAACTGCAGACGATCACAGAATATTATATTTGCTTTAATATTGGAGATGgtattttgtgtgtaaaatattatgggctggtatttatttttaggttatTTTGCTAACAGTTAATGCAAGAGAAGGATTCCTTTGTAaagatatatattgttaaattgAATAAACTTCAAGTGCAATATGTTTGACACacatttttgatattttgtaaatttgatcaaataatatgtattttaaagcagattttaaaattatttaattgcaaaacgATTTAACTCTGATCTGGGAAGTGTTGGATGCTGGGAGTTGTTGTTTCAACACATATATATGTTGAATGTATCATTGCACATTGCACAGCTGTTCtacttgtgttttaaatgtctttctgatAAGATTAGTAGAGGAGTCTTCACCAGCCTTCATGTTAATGACTGTAAAGAGAGGACAATCCGATGACCATTTAAGGGGCTTTGTCAAAATTGATGACACATTCTTGTGTTTGACTGTTCAAGAGGGCTATTAGAGGAACACTATTCCACTTTCATAGATTATACAGTAAAAATATAGTAGTGCCCTTAGACTGTGTGTGGGGACTGCAGTGTTTATCCGTCTGCAAGGTCTGTGCGTTGGGGGGTGGGGCACATCGTTTGGGTATCTGATATTTTGCCCCATCTCTTCATGTGGTAGCACTAGCTGACATTTGCTGACACAAAACACCATCTGTGTCTAAAACCAGTTTCTTCCATTCCCACAGAAGCACTCTAGTCCTTAAACTAAACTCTTTGATTTCACTTTCactgtttcttttttgctgaCTATTGAATTCCATTGCTGGTCTATGTCGGTGTCCTCTGTGTTCTGTATATTAGCAGTCACAGAAAAAATCCAAGGCAAATATTCTTCCTCATTTACTCCAAATGCCTTAACAGCAGCCTTAATAACTTCTAAGGACATTTCTTCTGTACAAGTCTCTATGAACTCTGCTTCTAACGACAGTCTGGACAATACCGGACGGTGAAATTGAAATCAGCCAATTCAGCTACCAATTGATGGTGTTAATGTTCTGGACCCATAGGCTATCACTCTCATGTTACCCTCCTTATGTTGAGAAAGCACTGCGCTTATCTCCTCCTGGGATGTGTCAGTATGCAGAGTAAAGACAGGGTACCCCATTACTGCAGCAAACAATCAATTCGACTATTCAGAACTAATTGGTGATGCTCTGTCCACTGAACTGGTTGGGACTTCACTACCCAGGATCCATTCTGCCTTTTCTGCCCTTTAGACACTTTGCCCTTTTCTGTTGATGAATGTGCATTTGATGGTACCCCCTGCCCCAGTTTCAGGAGCTCATATAATGGCTATGGAATTCTAGAGAAAACCATTATATACTGTCTATAACATCCCAGAAGCCCTGagatctttttgttttaatgtctgAACCGCAGCTGTGTCTGCAGGGTATATTTTACTGCCCTCTGCCGACACAATTCTCCCCAAATATCTGATTTCTCTTATAAACCAGTCACATTTGCTCTCCCACTGCTTAACCTTTATAACACCTGTCTGATGTGTTCCTCAAATGACTTGCTGTAGACCAGCACATCATCTAAATCTCTCAGGCCTTTTAAACATTCCCCCATATGTAACCCCTCTACTAAGTatggcatttttttcttcttttacaaAATGAAGGGGTTAAAATGGTTagaaaattgttttattgctgtttgaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59981 lncRNA downstream 21566 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA downstream 26449 48329718 ~ 48339610 (-) True G48047
TU59940 lncRNA downstream 88738 48276736 ~ 48277321 (-) True G48025
TU59936 lncRNA downstream 95495 48269344 ~ 48270564 (-) True G48021
TU59908 lncRNA downstream 149850 48215875 ~ 48216209 (-) True G47995
TU60036 lncRNA upstream 93157 48461526 ~ 48498711 (-) True G48082
TU60040 lncRNA upstream 101964 48470333 ~ 48472932 (-) True AMCG00013967
TU60041 lncRNA upstream 111079 48479448 ~ 48484310 (-) True G48086
TU60047 lncRNA upstream 137502 48505871 ~ 48506136 (-) True G48092
TU60061 lncRNA upstream 176868 48545237 ~ 48546275 (-) True G48106
AMCG00013965 mRNA downstream 101686 48261347 ~ 48264373 (-) True AMCG00013965
AMCG00013959 mRNA downstream 138948 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 154031 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013958 mRNA downstream 176757 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013956 mRNA downstream 185482 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013966 mRNA upstream 60534 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013967 mRNA upstream 87534 48455903 ~ 48479577 (-) False AMCG00013967
AMCG00013972 mRNA upstream 148564 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 154181 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013974 mRNA upstream 217262 48585631 ~ 48588321 (-) True AMCG00013974
TU59777 other downstream 391144 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 497196 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1165162 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1490689 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2202572 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 449614 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 449614 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 449614 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1116131 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1126358 49494727 ~ 49498630 (-) True G48392

Expression Profile