RNA id: AMCG00013965


Basic Information

Item Value
RNA id AMCG00013965
length 768
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00013965
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48261347 ~ 48264373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCATTCTGGGTCAATATGGGGTCCAGAGCAGGTGAGCAGTTGGGTTCACGGCACAGTGACTGTACTGTGTGGATATGATGAAGCCTACAGACAGCATGTGAAGTACTGGTGTAGAGGATCATACCACACTGCTTGTACAACACTGGCGAAGACTGGCGGCTCTGTGACAGACAGCAGGGTTTCCCTCATCAAGGGGAACGCTCTCATCACTATGAGGGATCTGAGACCGGAGGATGAAGGCTGGTACTGGTGTGGGATAGCAAGACCAGAAATACTGACAAGTGATGATGGTGCTGCTGTGCACGTCAACATCAACAGAGACCTTCAGGGTCCTGGGAACATCACTGGACAGCTATCTGGCGAGACAACGATCCGCTGCTCCTATTCTTCATACTATGAGACTCACACAAAGTACTGGTGTCAAGGagccaaacaaaaacactgcagccCGGTTGTGAGCACCGATTCCCAACACACTGGAGGCAGGACTTCAATCAGAGACGATCGGACCCGCAGAGAGTTCACCATCACTGTCAGGGACCTCAGAGCCGAGGACGAAGGCTGGTACTGGTGTGCAATAGATGGCAAAATACCCTTCAGAGATAAACTAGTCCCTGTGTTCCTCAGTGTCAACTCAGTCCCCGTGGTGCTCGGATCTCCCGACTCCAGGCCTAACCTTCTGGATCGGGGTCGAGACCCAGCCAGCAGCTCCCCATTCGCTCTGGATGCACAGCTGCACACAGAGCAGTGGAGGAGTGGGCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59908 lncRNA downstream 45138 48215875 ~ 48216209 (-) True G47995
TU59896 lncRNA downstream 81662 48179267 ~ 48179685 (-) True G47991
TU59811 lncRNA downstream 244509 48016561 ~ 48016838 (-) True G47917
TU59780 lncRNA downstream 286432 47967425 ~ 47974915 (-) False G47896
TU59711 lncRNA downstream 566453 47689845 ~ 47694894 (-) True G47839
TU59936 lncRNA upstream 4971 48269344 ~ 48270564 (-) True G48021
TU59940 lncRNA upstream 12363 48276736 ~ 48277321 (-) True G48025
TU59981 lncRNA upstream 44191 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA upstream 65345 48329718 ~ 48339610 (-) True G48047
TU60003 lncRNA upstream 101686 48366059 ~ 48368369 (-) False AMCG00013964
AMCG00013959 mRNA downstream 34236 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 49319 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013958 mRNA downstream 72045 48186287 ~ 48189302 (-) True AMCG00013958
AMCG00013956 mRNA downstream 80770 48179895 ~ 48180577 (-) True AMCG00013956
AMCG00013954 mRNA downstream 84366 48173372 ~ 48176981 (-) True AMCG00013954
AMCG00013964 mRNA upstream 101670 48366043 ~ 48375096 (-) True AMCG00013964
AMCG00013966 mRNA upstream 164530 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013967 mRNA upstream 191530 48455903 ~ 48479577 (-) False AMCG00013967
AMCG00013972 mRNA upstream 252560 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 258177 48522550 ~ 48524089 (-) True AMCG00013973
TU59777 other downstream 286432 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 392484 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1060450 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1385977 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2097860 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 553610 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 553610 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 553610 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1220127 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1230354 49494727 ~ 49498630 (-) True G48392

Expression Profile