RNA id: AMCG00013968


Basic Information

Item Value
RNA id AMCG00013968
length 3236
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00013968
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48547254 ~ 48572929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGCGGTGCGGGGCGGGCGTGCGGGACTCCCTCCAGCCGGCACTGCAAAGTTTGGACATCACGTGTCCGCCCGAGCAAGGCGCCCCTGGGCTTTTCTCGCCCCTGATTATTATTCCTGAATGGTGCTGCAGCAGACCGGCCGTCGGCGGCCCGCTCCCTGCCCGAGAGACGGCGTGCATCTCCGCGGCTTTCTGTCTGTCCGTCGTCATTTCTCAAATCCAGCCTCGGAGACGTATTCGCGATGACTGCGGGGGTACCGGTGCGCTGCCGGGGCTGCTGTCCGGACTCCTGACGGGACTCCTGACGGGCGGGAGGAGCACGTTGATTATATATGAGACTCTGTGGAAGAGGACATCACAGTCCGGGGACAGTTGGCTGAACGTCGGTCCTTCTATTCTACCccccattcattcattcattcgtttGTTTAAATTAAGCTGGACGAAGATATATGTACGACTGAAGTGATATTGGAAGCGATTTCTGTTTTCCCAGAGAATGcaCACTTGTGCAGGGCCGCTATGCCGTTGGCGACGCACACACTCCTGCCTGTTCACACCCGCTCCTGGCTACAGAATACAGACCACCTCACTTCCAGCTCACAGACCACCAGGAATGAGAACATAGCAGCCTGGTTCTGATCCGCGATTCGAGACCCACAGTCCCACTATGCTCCTCAAAGAGCACAACAGCGAAGGCAAGCCCGCCAAGATGGTCATCTGCGAGAAGAAGGTGGCGAAGAAGGAGGAGACACCTCGGTACGTCGACCCCCCTGATGGCGGCTGGGGCTGGATGATCGTGCTGCACTGCTTTCTGGTCAACATCCTGGTGATGGGCACGCTCAAGACCTTTGGCATCTTCTTCGTGGCATTCCAGGACGCGTTCGGCGGCTCCTCGGAGCAGATCAGCTGGATCGGCTCCATCATGTCCAGTCTGCGGCTCTCGGCTGGTCCGCTGGCATCCGTGGCCTGTGGCAAGTTGGGCAACCGCGTGACGTCCATTGTTGGGGCAGTGCTGGTCAGCGCTGGCTTCCTCATGAGCATCCTGGCCACCAGCGTGATCTTCCTGTACGTCAGCATGGGCGTGATCGTGGgGATCGGCTTCGCCCTCCTGTACCAGGCCACCTCCGTTGCCACGGCCACGTATTTCAGAAAGAGGCTGGCGACGGCCTACTCCATCGGCCGCTCTGGGATGGGCCTGACCTTTGCTCTGGCCCCCTTCACACAGCTGCTTCTGGAGAGCTACGGCTGGCAAGGAGCGCTGCTGATCCTGGGGGGGCTCATGTTGAACCTGGTTGCCTCTGGGATGCTGCTGAGACCCATACATGTTAAGGGCACCGAGCCAGACCCCGCCCTGCAGGATCACACCAACAAACCCCCGGGACCCGAGAAAGCTCCACTGTCCTTCCAGAATGGCCTGAACGGGGGGGGCCCATTGACGAATGGAGGCCCCATCTCCGACCCCCACTCAGGCACCCACCAGGAGATCCCCCTCCAGAATGGTGCATTGCAGAATGGGCACGAGAAGCATAGCCCCGCCACGGGGAAGGGGCCCATCCCCTCCAATGAAGCTCAGTTCTTCCTGAAGCAGAATGGCCAGGCTCCGGCGAGCGAGGATGTGTCCACGGTCTCCAAGCTGCTGGACTTCTCTCTCCTGAAGGACCCTTTCTTCTGCATCTTCACATGGTCACTGGTCTTCAGCCAGCTGGCCTACTTTATCCCCTATTTCCACCTGTCCGCCCGGGCCAGGATCCTCGGCATTGACCCCATGGATGCGTCCTTCATCATCTCGGTCGCCGGCATCACCGAGACAGTGGCCCAGCTGGTATCGGGCTGGGTGGCTGACAGGAACCTGATCCACAAGTACCACTACCACAAGGCCTACCTGATCCTGTGTGGGGTCGTCAACCTGCTGTCCCCTCTGGCCACCACCTACATCCAGCTCATGATCTATGCCATCTTCTTCGCTATCTTCTGCGGGGGCTACATGGCGCTGCTGCTGCCTGTCTTGGTAGACCTGGTTGGGGTGGAAAGGCTGAACAACTCGATGGGCTTCTCCATGTTCTTTGTGGGGATCGGCTGCCTCACGGGACCCCCGACTGCAGGCCTGCTGTATGACTACACCCGCACCTACGACTGCTCCTTTTACCTGGCCGGCGTGTGCTACCTGCTGTCCTCCGTGTCCCTCTTCCTGGAGCCACTGGCCCGTCGCTGGACGAAGATGAGGAGGCCGGAGGGACGGACCGGAGAGACGACGGGCCGCCAGATCAACGGCCGTGTCGTGTTGGACAGCGTGCGGAAGGGGGTGGTCTAGGAGCGCTGGCGGGGCGGGACCAGGCTGGGTCGGATGTCCCGTGCGATATCTCCCCTGGGGGTGCTGAACACTGGAAGCCACGCATCGCCGGGGTGTTGTCGTTGACTACCCCAGCCTCCGGCTCGTCTGCCGGGAtggaggtcaaaggtcaaccACTGGTTCGATGGACCTTTGAGGTGCATCAGAAACCCAGCCTTTGCACAAACAATACACTAATGCAACTCAGTGAGGCGGGTCTCTGAGAACCGAAAGGAAAGGACACCTCCTCTCTCTCAAGGCAAGAGACTTGTCATAGCCAGCAGAAGAGAGGAACGAAATCCGATTCTGTAATGTTTGAATATGAGCCAAATGAGCACTTTTGTTGCACATGTTATAAacgttattattttattttccttctttttaaaaCTGACTCTTTCTGATCACTGCAGCTCTCTGCAGTCCTCAAACCACATGGGGGTGGGTCTAGAACCCAGAGCTGCGGGACACAGACCCCCCTGTGGGCCTGAGACGCGCCCGTGTGCAACACTGCTGCGCCTCATAATCAAACCCATACCAGGAATGCAGAGCGTCAGAAGAACACGTGTTCCTCTTCCCAATCCCCGCAGTTCGTCCCTCTCATTGTTACAGTCCGCCATGATCTCAGCCTCCAGGCACGGCTCCCCTGCCGTCTTCACAGCCATTCCCCTCAGTCAAGGGCCCAAGAGCTGGGTGCCACCGTGTCCGCTGGCTGTGGGGGGGGCTCAGAGTCACTATTATTCACTTTCATTGCCATGTTTTTACATGAACCAATACAAccacagcaaataaataaatagtctttGAATTTACATATGGAGAGGAAAttggggatttttttaaaatattatataaatataaaatatacttcTTTATATTCAGATCAggatattgaaataaaat

Function

GO: NA

KEGG:

id description
K08181 SLC16A4; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60048 lncRNA upstream 32344 48514692 ~ 48514910 (+) True G48093
TU60046 lncRNA upstream 41056 48505871 ~ 48506198 (+) True G48091
TU60028 lncRNA upstream 53215 48493045 ~ 48494039 (+) True G48075
TU60027 lncRNA upstream 71806 48472380 ~ 48475448 (+) True G48074
TU60026 lncRNA upstream 90374 48455921 ~ 48456880 (+) True G48073
TU60078 lncRNA downstream 7042 48579971 ~ 48620338 (+) True G48121
TU60094 lncRNA downstream 113038 48685967 ~ 48746141 (+) False G48134
TU60091 lncRNA downstream 159196 48732125 ~ 48746141 (+) True G48134
TU60123 lncRNA downstream 219058 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA downstream 219058 48791987 ~ 48795514 (+) True G48155
AMCG00013971 mRNA upstream 1054 48533886 ~ 48546200 (+) True AMCG00013971
AMCG00013970 mRNA upstream 42643 48503169 ~ 48504611 (+) True AMCG00013970
AMCG00013969 mRNA upstream 52942 48490544 ~ 48494312 (+) True AMCG00013969
AMCG00013963 mRNA upstream 124461 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013961 mRNA upstream 288821 48239700 ~ 48258433 (+) True AMCG00013961
AMCG00013977 mRNA downstream 22674 48595603 ~ 48598036 (+) True AMCG00013977
AMCG00013975 mRNA downstream 38713 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013978 mRNA downstream 142441 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013989 mRNA downstream 215544 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013983 mRNA downstream 241837 48814766 ~ 48816208 (+) True AMCG00013983
TU60059 other upstream 2126 48541942 ~ 48545128 (+) False AMCG00013971
TU59942 other upstream 195969 48281063 ~ 48351285 (+) True G48026
TU59933 other upstream 277982 48268754 ~ 48269272 (+) True G48018
TU59923 other upstream 291433 48254294 ~ 48255821 (+) False AMCG00013961
TU59915 other upstream 297541 48248067 ~ 48249713 (+) False AMCG00013961
TU60104 other downstream 182024 48754953 ~ 48760712 (+) False G48142
TU60105 other downstream 182024 48754953 ~ 48760712 (+) True G48142
TU60116 other downstream 203568 48776497 ~ 48778459 (+) True G48150
TU60138 other downstream 248321 48821250 ~ 48826055 (+) False AMCG00013985
TU60248 other downstream 441700 49014629 ~ 49067016 (+) False G48235

Expression Profile