RNA id: AMCG00013971


Basic Information

Item Value
RNA id AMCG00013971
length 2031
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00013971
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48533886 ~ 48546200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGCTGATTAACGGCACCACACTGGTGCTGAACTGCACTGAACTGTCCAGTGTCCTGCAACGCTCTGTCCCAGAGGGGCAGGGCCACATGGCTGTGACAGAGGAGTGTGGGAATCTACCCAGTATGGAGGCAGCGCTGGAGCAGCACCTGGATGATACGATGAAGAACACGGCCATCGTTGGCGTCCTGTGCACCGACCAGCAGGGCCACAGCCTGGGCTGCCGAGGCTCTCTGTCGGACGAGCACGGGGGGGTGGTGTCCGTCCTGGCCAACCAGGCCTCCAAGCTGACCACTGACTGCACCGACAGCCCCACAGTGTGCCTGGAGTCCGACAGCGGGAACATCTTGATCAGGAAACACGGAAGCATCACTCTGGCCGTGCACAAGATGGCTTCCTGACTCCTGTCACAGAGAAAGAACACGCTCTGggacattttagtttatttcccGTGGGGCAGGGCCTGGACACTCACCCGACGACACCTCAGCAGCAATCAGGGCTGAACACGCGTCCGGCCACCCTGCagtcacgtgtgtgtgtgcgtgtgcgtgtgtgtctgcgtgtgtgtgtgtgtgtgtgtgttccccaGCAGCCATGTTGGGATGTTTGTGCCGGACTTTGCTTGCCCGCAGCTGGATCTTGAAATAGGAAACTGTGTTTGACTTCCTGACGCTGTCCCTCCTCCGGGTCTGTGCGGCTGTTGTCGTGGTGTCGTGACGGCCCTCTGTCCTCTGTTTGGATGAAATTAAACACTGCGTTCCTCGTTCAGATGTACTTTAACCCTGTTAGCTAATGATTGTCCCGTGTAAAACTGGAGTAAACCatgtttcagaaacaaatatttaataaaatgaaaaatgtcctACGTGAAAGCTTTCAAGGTTATTGTTGCTGTGACTTAATTTGAACGAGGGTGTGAAGAGGCTGGAGTTCACTATCCTGGGGATCCTCTCCCTGGAGCACGCTATGCTTTTACACTTTTCTATTAAACTCTACATTGTATTGTTctcaaattgaaataaacaatacaaaaataacacgGAGACCCTTTCTGGGGGCGGATTCTTCCCTTCTGTGTAAATGTACAGACTCTTTATGTGGGTTAACTCTGATATAAATCCATTAGTTGACGACCTGTTCACTGTTTTGCACAACCCGTGTCTGCCCAGCAGGGGGTGCTGAGGTCCTATAGCAGCAGCGCACTGTGCACTTCAGAAAGCCGGTTTTGTTCAGCAGGGGTTGCCAACTATCGTGATAGTCCTGGAGTCTCTGGCAATTACAGATTCAACTCCCGTAACACATCTAGGGAAAAACAAGGAGCATATTTACTCTCTTTTGAGCTTCTTGGCAGCTCCATACCCCagtctttttaaatgctttttgtccACACACTGGATGAGGTGCAAATAAAAGTTGCTTTAGCAGAGAAAACATCTTGTACCTCTGTATCTTCTGCTACAactagtgtgtgtatgttgggGCGGGGGGGATCTAGCTGGCTATGGCCTGGGGTTTGAACAGATGTTTGGCCTTGAAATGGGGCAGAAAATGTAGAACAAGGTTGTGTAGCGCATAGTCAAACAGATCGGGACCAAGGACTCTGAATATTTAGGTGTCAGGCTGATTCATTGCCAGATCGGTCTCtgaaagaaatgtattgatCAGCAGCTATTTTGAACTAATCCATATCAGTCGATTGGGTTGAAACAGTGCCTGTGCGAGCCTGCCTTTCATTGTGGGGCTTGAGAAGTGTGTAACGGACAGAGACGCTCAGTTCCCAAAACAATGACTGTGCCTTGCCTTGCCATGTTCAGGAGATCAGGTAAACATGGGTGAATTGATAACAACCCGTCCTGTTGTTTAAGTCATCCACAAGGTCACATAAGGTTGAGTTTTACTAACTGGGCATGACTAAGTAATCATAATTACTAATTATGTATGCTGTTGATTATAAAGTAATCAATATAACCTGTTGCATATTAACCAGCATTTGATGGATATTATTTGACCTACCAATTTTCTTGTCC

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0019079 viral genome replication biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16344 LAMTOR5, HBXIP; ragulator complex protein LAMTOR5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60048 lncRNA upstream 18976 48514692 ~ 48514910 (+) True G48093
TU60046 lncRNA upstream 27688 48505871 ~ 48506198 (+) True G48091
TU60028 lncRNA upstream 39847 48493045 ~ 48494039 (+) True G48075
TU60027 lncRNA upstream 58438 48472380 ~ 48475448 (+) True G48074
TU60026 lncRNA upstream 77006 48455921 ~ 48456880 (+) True G48073
TU60078 lncRNA downstream 33771 48579971 ~ 48620338 (+) True G48121
TU60094 lncRNA downstream 139767 48685967 ~ 48746141 (+) False G48134
TU60091 lncRNA downstream 185925 48732125 ~ 48746141 (+) True G48134
TU60123 lncRNA downstream 245787 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA downstream 245787 48791987 ~ 48795514 (+) True G48155
AMCG00013970 mRNA upstream 29275 48503169 ~ 48504611 (+) True AMCG00013970
AMCG00013969 mRNA upstream 39574 48490544 ~ 48494312 (+) True AMCG00013969
AMCG00013963 mRNA upstream 111093 48418257 ~ 48422793 (+) True AMCG00013963
AMCG00013961 mRNA upstream 275453 48239700 ~ 48258433 (+) True AMCG00013961
AMCG00013962 mRNA upstream 294641 48236763 ~ 48239245 (+) True AMCG00013962
AMCG00013968 mRNA downstream 1054 48547254 ~ 48572929 (+) True AMCG00013968
AMCG00013977 mRNA downstream 49403 48595603 ~ 48598036 (+) True AMCG00013977
AMCG00013975 mRNA downstream 65442 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013978 mRNA downstream 169170 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013989 mRNA downstream 242273 48788473 ~ 48790311 (+) True AMCG00013989
TU59942 other upstream 182601 48281063 ~ 48351285 (+) True G48026
TU59933 other upstream 264614 48268754 ~ 48269272 (+) True G48018
TU59923 other upstream 278065 48254294 ~ 48255821 (+) False AMCG00013961
TU59915 other upstream 284173 48248067 ~ 48249713 (+) False AMCG00013961
TU59522 other upstream 1460178 47069701 ~ 47073708 (+) False AMCG00013919
TU60104 other downstream 208753 48754953 ~ 48760712 (+) False G48142
TU60105 other downstream 208753 48754953 ~ 48760712 (+) True G48142
TU60116 other downstream 230297 48776497 ~ 48778459 (+) True G48150
TU60138 other downstream 275050 48821250 ~ 48826055 (+) False AMCG00013985
TU60248 other downstream 468429 49014629 ~ 49067016 (+) False G48235

Expression Profile