RNA id: AMCG00013982


Basic Information

Item Value
RNA id AMCG00013982
length 2621
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00013982
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48839531 ~ 48843626 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCCCCGCCCCACGCGTATCAGAGCTGTTCCCGTCCGTATCCAGGAAGTGCGTGTAAACAGAGACGGACGGACGGACTGACAGCGCAGGAGCTAATCTGGCCGGCCGATCAGCCGCCGGGTTCAACAGGGACTGCACAGGGGCGCCGCCGGGCCGCTGATCGGCTCAGCTCTGTCCCACTGACGCCCTGTGGCGGAGCTTGGTCTGCAGGGAGAGGAGGGACAGCATGCCGCCCGTCCCCGGCTCCGCCACTCCCCGCAGCAGGGCTTCCCTCCAGCAGCGAGGCTGATCGGATCAAAGCGGGCTGCGGAGCCTCTGCGGAGCGGGACTTGTGGACtaacctgtgtgtgtggaaatgtgCGGACCCGCCATCTGCGCTCTGTGACGAGGCGGCCGTCGTGCGATGTGCACCTGAGCCGGACCGAGCCTCCAGCCTGAGACGCCGGTACCGGCCATGCGTGGGGACGTGCAGTACAGCCCGGTGGGGGAGGGCCTGGGCCTGGGCCTGCGAGAGTTCTGGCTGTACGGCTGGCTGCGCACGGCGGCGGTGGTGGCCGCACACGTCGTGGCGCTGGGCTTCACCATCGTCATCACCCTGCTGTCCCGGCCCGGCACCAGCCTTTTCTCGTGGCACCCCACCTGCATGTCTTTCGCATTCTGCCTGTGCGTGACGGAGGgggtgctgctgctgtctgcGGAGGGCTCCCCGCTCTGCCTCCGCTCCAGGCAGGGCCGCGTGCGAGTGCACTGGGTGCTGCAGGCCCTGGCCGGGGTCGCGGCTGCGACGGGGCTGGGCTTCATCGTGGCCAGCAGGAACGCGTCGGGCCTGCCGCACCTGTCCTCCTGGCACGGGCTGCTGGGCGCCGGGACGCTGGCGGCCACGGCCTGCCAGGCGCTCTGCGGCCTCGTGCTGCTCTTCCCGCAGGCCCTGCAGGGCCCCTCGCTCGGCCGGCTGAAGCTGTACCACGCCACCTGCGGGCTGCTGGCCTACCTGCTGGCCACGGGCACCGTGCTGCTGGGCATGTTCAGCGACTGGTTCCAGGGCATCATCAAGGGCGTGGTGTGGTACGCCTTCCTCCCGCTGCCCCTGTTCCCTGCGCTGGTCGTCATGAACCAGATCACCAGCGCCTACCTGCCCAAGAGGAAGATCACCACCTGACCTCGGCCCGGCCGGAGCACGGAGACGGACTCTGAGCTCCACGAACTGCAGAGACTGAGTAGGACAGCAGAGGGgctgcgtgtgcgtgtgcgtgtgtgagcgATGTTTGTTTTAACGGCCAGTCTTGTCTGTATTCAAGGTGGTAAGaggtggattttattttattgatccTGTTCTGCGATGCTGTTAAACTACACAAGACCCCTGTCGTtcactttgtttatttctgttgtgtgttttgttttgtttttgcacttgtttttaatatgtagtGTTTTGGGTTTTAGTTTTTACCATTACGtggtgttttctgtctttgttgcCTGTCCTTCATCCTGCTGTTCTGAgttgcgtgtgcgtgtgtgtgcggtCTGGCTCTTCTGCACAGGTGATTGTGAGGGCCCTTTACATCGCTTTTTGATCTATTTGTATAGAAGCACTGATGTGGGAGGAGGggacactaataataatacagagtAAACTTTATTCCAAGTTTCTAATGCCGAATATATGTACACCTTGAACCTCCCTTCAGTGTGTGGACAAGAACTGCTCAACCAAAACGCCAGCAGCACAGCTTGTCCTACACCACATGTGACCTTTAACCTTCCCCGGCTGGGCACTCCTGCCATCTCCGGCTTGGTTCCCCAGCTCCTGCGGCCCGCGTGTCTCGTCCCGGCGCTCCTCGGGCCTGAGTCGAGGAACGACAGAAGTAGAGACGTACCGGGTTCTTCTGAAGCCTGTTAAGCTGGACTGTTTTGATGCATCGGTATTGATGTGGAAGAGCCTGTGGGCTGCAGATCATGACAGCAGGTCGAGCGGCATCCCTGGGACGAACGTGGCGCTGCTCGGCGACGCCTGCTCCTTCAGCCAGAGAAAACGGTTGCCGAGTGcggtttgttttattgtgtgtcttttttattctttttcccTGGCTCTGTCCATTAAAGCTCTTCTCTGGTTGTTGTGGCTGTTGTTTGGCTTTGATAATGGGGATCCGTGTGCTGTGCACAGAGCCAGGCTGTGCCAGTGCGTCGCCCTCGCCCCTACACGGTGGAGGGCCCTGAGTGAAAGAGGGTGTCTCAGATGAAGAGTGAATGATTGAGGGGGGGGCTGGACATCAGGCATTAATGTGGAGAGAGATTTCAATCCAGGAAGCAGTGCCGGGCGGGCTGGGGAAAGCTCTGTAGCGGTGCTGAGGCTCTACATGGGGGCAGCATTGGGCTGGCGAGGGTGGGGAGTGATGGAGAGTAATAAACACCCAGAGAGCTGTAGAAAAGAGCGTGATTAAAGCAGCAGTGTGTAGGGGGCGCCAGTGCGTAGTTTTCACAGATCATCCGAGCCGCTGAAGCACAGGGCACAGGGTGCAGTTCATCATGGGGTCACTGGGTGGCAGTGTCGAGCCGTGCCGCAGGTTCGTCATGCCCGGCTGCGAGTCTTCAGTCTGAaggacacactgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60140 lncRNA upstream 10556 48827054 ~ 48828975 (+) True AMCG00013985
TU60139 lncRNA upstream 15918 48822701 ~ 48823613 (+) True G48167
TU60123 lncRNA upstream 44017 48791987 ~ 48795514 (+) False G48155
TU60144 lncRNA downstream 2438 48846064 ~ 48851011 (+) True G48171
TU60146 lncRNA downstream 10360 48853986 ~ 48854363 (+) True G48173
TU60250 lncRNA downstream 183542 49027168 ~ 49050298 (+) True G48236
TU60257 lncRNA downstream 224479 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA downstream 246688 49090314 ~ 49095546 (+) True G48235
AMCG00013984 mRNA upstream 1390 48833345 ~ 48838141 (+) True AMCG00013984
AMCG00013985 mRNA upstream 12106 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013983 mRNA upstream 23323 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013989 mRNA upstream 49220 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013978 mRNA upstream 113273 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013988 mRNA downstream 43128 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013995 mRNA downstream 53176 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013992 mRNA downstream 64511 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013993 mRNA downstream 95436 48939062 ~ 48956865 (+) True AMCG00013993
AMCG00013996 mRNA downstream 501471 49345097 ~ 49348601 (+) True AMCG00013996
TU60138 other upstream 13476 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 61072 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 78819 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 78819 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 294403 48541942 ~ 48545128 (+) False AMCG00013971
TU60248 other downstream 171003 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 233116 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 501602 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 694428 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 694428 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile