RNA id: AMCG00013984


Basic Information

Item Value
RNA id AMCG00013984
length 1995
RNA type mRNA
GC content 0.71
exon number 10
gene id AMCG00013984
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48833345 ~ 48838141 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGTGCGTGAACGCGCAGCGGCAGTAATGGCTGCTCTAGATCGGCGGGTTCCGAGTCTCGAGGATTTTGCGGGCCAGAGCTGGAGCTCCTGGGTCGAGAGGGCCGACATTCCCGCGGCGGATGGACTGGATGTGGAGGAGGGCGGCAAGAACGGGCGGAAGAAGGTGGAGGCGATGACACTGCGAACAGAGGacATGTCTATCTTCGGGCTGTGTCCCGCACACGATGACTTCTTCCTGGTGGTGTGCAGCCACTGCAGCCAGGTCGTCAAGCCTCAGGCCTTTGAGAAGCACTGTGaGCGCAGACATGGGCCCCTCAGCAAGCTGTACAGCCACCtgcacccctccccctccgccCCACTGCCACGCCTGCGCCCTGGACACCCCCCTGCTTACCATGGGACGTCCCGGGCCGGCAGAGACCGGCCTCAGGGGGTGACCCCCCCCCGAACCCCACTGCAGCCGCCCCCACAGAGGAGCGCCAAGGGCCAGAAGGATGGAGGCGGcagCCCATTTGCTCCGGCAGTGAATGTCGAGAAGGCGCCCCCCCAGTTGCCGAGCGACAGCCCCAATGTGAAGCTGCCCGCCCCCCCCGTGCCCCCCCCGGCACCCTGCTCCCCTGGCCCCCGGGACCCTCCCAGTGGCACCCCACCCTCGGAGAGAGCGCTGTCCCGGCGGGGGGAGATCCACTCGGTGCACCAGCGCCGCAAGGTGACGGGCCGCACCAAGAACTTCGACCAGCTGGTGGCTGAGCTCAAGACAGGGGCATCTCGGGGGCGGGAGCGGGGGGCTCCATCCCGGGACAGGTCCGGCCCCCCGAGCCCCGACACCACCACCCCTCCGGGGGACCCCAGCGCCGCCCCCAGCTGCCGGCGCCGACTCCCGAACTGCACCGCGCTTAGGTCCGGGACGTCGTCGGACAGCggcggggagggggaggggacgGAGCCGGACGCTGAGCCCCTGTGCCCCCCCGAGCACGAGCGGCTCCATGCTGTGGGCCGTGGCGTCTTCACCTTCGACCGGCGGCTTCACCACCTGCGTGCCGCGCTCAGCAGCATGGTGGAGAGACACCTGAGTGCTCACCTGTGGAAgaAAATACCTCAAGCAAAAGACCTCCAATCACAGCGTACCTCGGCAGCCACcccagcctcctcctcctccccttctTCCTTCCAGCATTCTAGCTCAGCTGCTAGTCTTCCCAGCGCTTCCTCCCTCAGGCCCTCCTCTTCCTGTGTGATGTCATCGGCCCTCGCCAAAGACGCCAGGCTCCAGCCGTGCCCCGCGGCCTCGCCCGGCCCTGGCACGAGCAACGTGGGGGGGGGCGGGCAGTCCATCACCTCGCCGCTGCCTGCCAACACGCCCTCGCCCTCCCCCTCGGGCCCCGGCCGCACCCCCACGCCCGCCGCCAAGCTGGGCAAGCCGTGCCGGCTGAAGGAGGGGGCGGGGCTGGAGCACAGCGCCGCCTCTAGGAAGAGGAAGAAGCCGCCATCGCTGTGCAGCGAGGGCCCCTCTGGCCCCGACCGGAGCCGCGCGCCGCCGGAGAGGGCGGGACGTACGCCCGTGTCCCCCCCAACAGAACCCCTCCGGATCGCCCCCGCCCCCTCgcaaaccccctccccccacggACCGCTCAATGGGACCCTCTCCCCGGGCAACAAGCCCCGCCCCCCACCGCCTCCCTCTCCGCGGCCCCTGCCCCCCCCTGACCCCGGCTCCCGCGGCCGGCCTGGGGGGGGGCAGCCCGGGCTGCGCTGCAAGACCGTCGGGTATGACCACGGGGGCCTGGGCAAGAAGCGCAAGAGCGCCGGCCCCCCAGCCCCACCGCCACGGCCCTCCAAGCCCCACCGCGCCGCCCCCCCGGCCCACTCCAGCTTCTTCTCTTGGAAGAAGGACGTCAAGGGGGCGGCGCTCCCCGCCGGGCTGGGGAGGAAGCTCAGCACGCAGAAGGTGGGTGTGAGTCGTGCGCCAGTGAAGACGGGCAACTGA

Function

GO: NA

KEGG:

id description
K11318 ATXN7, SCA7; ataxin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60140 lncRNA upstream 4370 48827054 ~ 48828975 (+) True AMCG00013985
TU60139 lncRNA upstream 9732 48822701 ~ 48823613 (+) True G48167
TU60123 lncRNA upstream 37831 48791987 ~ 48795514 (+) False G48155
TU60124 lncRNA upstream 37831 48791987 ~ 48795514 (+) True G48155
TU60126 lncRNA upstream 37831 48791987 ~ 48795514 (+) False G48155
TU60144 lncRNA downstream 7923 48846064 ~ 48851011 (+) True G48171
TU60146 lncRNA downstream 15845 48853986 ~ 48854363 (+) True G48173
TU60250 lncRNA downstream 189027 49027168 ~ 49050298 (+) True G48236
TU60257 lncRNA downstream 229964 49068105 ~ 49112083 (+) True G48243
TU60247 lncRNA downstream 252173 49090314 ~ 49095546 (+) True G48235
AMCG00013985 mRNA upstream 5920 48821356 ~ 48827425 (+) False AMCG00013985
AMCG00013983 mRNA upstream 17137 48814766 ~ 48816208 (+) True AMCG00013983
AMCG00013989 mRNA upstream 43034 48788473 ~ 48790311 (+) True AMCG00013989
AMCG00013978 mRNA upstream 107087 48715370 ~ 48726258 (+) True AMCG00013978
AMCG00013975 mRNA upstream 217193 48611642 ~ 48616152 (+) True AMCG00013975
AMCG00013982 mRNA downstream 1390 48839531 ~ 48843626 (+) True AMCG00013982
AMCG00013988 mRNA downstream 48613 48886754 ~ 48888169 (+) True AMCG00013988
AMCG00013995 mRNA downstream 58661 48896802 ~ 48904030 (+) True AMCG00013995
AMCG00013992 mRNA downstream 69996 48908137 ~ 48913068 (+) True AMCG00013992
AMCG00013993 mRNA downstream 100921 48939062 ~ 48956865 (+) True AMCG00013993
TU60138 other upstream 7290 48821250 ~ 48826055 (+) False AMCG00013985
TU60116 other upstream 54886 48776497 ~ 48778459 (+) True G48150
TU60104 other upstream 72633 48754953 ~ 48760712 (+) False G48142
TU60105 other upstream 72633 48754953 ~ 48760712 (+) True G48142
TU60059 other upstream 288217 48541942 ~ 48545128 (+) False AMCG00013971
TU60248 other downstream 176488 49014629 ~ 49067016 (+) False G48235
TU60243 other downstream 238601 49076742 ~ 49100458 (+) True G48231
TU60357 other downstream 507087 49345228 ~ 49347221 (+) False AMCG00013996
TU60435 other downstream 699913 49538054 ~ 49545335 (+) False AMCG00014010
TU60436 other downstream 699913 49538054 ~ 49545335 (+) False AMCG00014010

Expression Profile