RNA id: AMCG00013991


Basic Information

Item Value
RNA id AMCG00013991
length 423
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00013991
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48817983 ~ 48821156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCTGACCAGATCGGAGTATGACCGAGGTGTGAACACGTTCTCGCCGGAGGGGAGGCTGTTCCAGGTGGAGTATGCCATCGAAGCGATCAAGCTGCTTGTGACTTGGGGAGATGAGCCTGTGGGCCTGTTGTGCGCTGGTCTGGACGGGCAGCCCTCCGCCACTGTGGCTCTGAGCAGCCCGGCCTCTGTTCTGGGCTCTGCTGTTTCAGTGCATCTGGGCTCCACAGCCATCGGGATCCAGACGTCGGAGGGGGTGTGCCTGGCCGTGGAGAAGAGGATCACCTCTCCTCTGATGGAGCCCAGCAGCATCGAGAAGATCGTGGAGATTGACACACACATAGGTAGGGCCAGCGCCTCCCGCAGGGGATGGGTGCAGCTGTCAGTGAATGCCAATTACGACTTTGGGGACTTAAATTAG

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60148 lncRNA downstream 167394 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 272348 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 312487 48505871 ~ 48506136 (-) True G48092
TU60041 lncRNA downstream 334313 48479448 ~ 48484310 (-) True G48086
TU60040 lncRNA downstream 345691 48470333 ~ 48472932 (-) True AMCG00013967
TU60289 lncRNA upstream 207451 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 533859 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 633200 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 717895 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 721526 49541359 ~ 49545278 (-) True G48398
AMCG00013986 mRNA downstream 11036 48795219 ~ 48807587 (-) True AMCG00013986
AMCG00013987 mRNA downstream 25748 48792374 ~ 48792875 (-) True AMCG00013987
AMCG00013981 mRNA downstream 33398 48776500 ~ 48785225 (-) True AMCG00013981
AMCG00013980 mRNA downstream 42485 48757586 ~ 48776138 (-) True AMCG00013980
AMCG00013979 mRNA downstream 63796 48745893 ~ 48754827 (-) True AMCG00013979
AMCG00013990 mRNA upstream 31455 48851288 ~ 48852970 (-) True AMCG00013990
AMCG00013994 mRNA upstream 98564 48918397 ~ 48925913 (-) True AMCG00013994
AMCG00014000 mRNA upstream 473294 49293127 ~ 49298717 (-) True AMCG00014000
AMCG00014003 mRNA upstream 482789 49302622 ~ 49310125 (-) True AMCG00014003
AMCG00013998 mRNA upstream 492477 49312310 ~ 49317429 (-) True AMCG00013998
TU59777 other downstream 843708 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 949760 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1617726 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1943253 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2655136 46160539 ~ 46163487 (-) True G47501
TU60423 other upstream 664667 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 674894 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 899932 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 908671 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 925113 49744946 ~ 49747551 (-) True G48516

Expression Profile