RNA id: AMCG00014000



Basic Information


Item Value
RNA id AMCG00014000
length 1926
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00014000
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49293127 ~ 49298717 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGCTCCTGATCATCATGGTGATCCTGTCAGGTAAAGACAGCGTCTCCCTGTGCTGGACTCTCAATATGGGCTTTCACACGTCACAGGACACTGTGCATCAGAGGACAGGACAACAGCGAGGCTTGGTGGTGACCTCAGGATTTCAGTCTCCAGACAAGGGGAGTGCCCATTCTGGGTCAATATGGGGTCCAGAGCAGGTGAGCGGTGTGGTCCACAGCACAGTGACTGTACTGTGTGAATTTGATGATGGCTATAGACAGCATGTGAAGTACTGGTGTAGAGGATCATATCTAACTAATTGTACAACACTGGCGAAGACTGGTGGCTCTGTGACAGACAGCAGGGTTTCCCTCAGTGAAGATCAGTCAAGGGGAACGCTCTTGGTCACTATGAGGGATCTGAGACCGGAGGATGAGGGCCAGTACTGGTGTGGGATATCAAGACCAGGAATACTGACAAGTGATGATGGTGCTGCTGTGTACGTTAACATCAACAGAGGTGCCACAACACTAGATCTTCAGGGTCCTGAGAAAGTCACTGGACAGCTATCTGCTGAGATGACAATCCACTGTCTCTACTCTGAAGACTATGAGACTCACACAAAGTACTGGTGTAAAGGAAACAGGCAAATAGACTGCAGCATTGTTGGGACCACCGATTCCCCACAGACTCGAGACAGGACTTCAATCAGAGATGATCGGACCCGCAGAGAGTTCACCATCACTGTCAGGGACCTCAGAGCTGAGGACGAAGGCTGGTACTGGTGTGGAATAAGGAGAACCTTCATTGATAAACTGGTCCCTGTGTACCTGTCTGTCAACTCAGcaacacaaccTGGATCCACTGAAGCTCTGGACACAACCACAGCCAGAGAGGACCCCACAGTGACCAGAGCTGGACCCACACCTGCTCCCACCTCCAGAACCGAGGAGCCAAGCCCCCACACCGTCCCCGTGGTGCTCGGAGTGAGCTTTGGAGTCCTGCTGTCCCCGTGTGTCCTGACCCTCATCATCACTAGGAAGATGCACACCCTCGACTGGTACAGAGGTGACCTACGCGACAGTGACGGCAGTGAGCAGCACACAGCCCCAGAGAGACAGCAGCACCTACGCCAACATCAGCTTCTTTCCCCGGCCGCCCTCAGAggacactgtgctgtactccACCGTCGCGCTCTGAGGGGCTCTGGACTTCATGTGCAGGAGGAAGAGCACCCAGAGATGACCGTGACAACTTCCTGTTGGATCACTGTGCTTTGATTGACTCCTATGTTCTcatcataatttatttcttagcagacagcTAAGCCTGCAGCCATCACAGAGTACACACATCAAGGGACACGGCACAGAAAACACAAGAGAAGCTCAGAGCAGAGACATCATaatgatgttttaaataaatatatatttaaaaataaaaatgcctttcCTGTATCAGCCTggtcttatttattatttgttaaaatacattaatttcatttatttagcagACTCACATTCAAAGGGAAAGcagcattttaaacacacaacactgtaaaGTGTATTCCAGCCCCTGAGTCAAACATTTCCAGTGGTGAGCAGAGAAAGCAGGATGTATACATTACAGCATATTTTAAAGCAAGATATTCAGAACAAAAATAGTGATGAATGCAATACCTCTTTAACAAGTGCTTTTCCTGATTCAGTCTTTTAATTACTATGAGAAATGGAGCTGTTGCCAATCAAGCTGGACATCTAAGACAATGATGTTCAAACCCTCCCTTGCAATTCTCTTTTAAAGTGCTTTAGGTACCTCTGCAGGTTGACTTTAGTCCGAATGGCAAATTCGTCTGTGTGGTTTCAatctttataaaatacatgacTTACTGCTCCCGTTTCATTTAACAGtgttcacagcactgcacagcaaACTGCTCTATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60289 lncRNA downstream 242695 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 641898 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 746852 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 786991 48505871 ~ 48506136 (-) True G48092
TU60041 lncRNA downstream 808817 48479448 ~ 48484310 (-) True G48086
TU60404 lncRNA upstream 54975 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 154316 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 239011 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 242642 49541359 ~ 49545278 (-) True G48398
TU60502 lncRNA upstream 314979 49613696 ~ 49613974 (-) True G48430
AMCG00013994 mRNA downstream 367214 48918397 ~ 48925913 (-) True AMCG00013994
AMCG00013990 mRNA downstream 440157 48851288 ~ 48852970 (-) True AMCG00013990
AMCG00013991 mRNA downstream 473294 48818623 ~ 48819833 (-) False AMCG00013991
AMCG00013986 mRNA downstream 485540 48795219 ~ 48807587 (-) True AMCG00013986
AMCG00013987 mRNA downstream 500252 48792374 ~ 48792875 (-) True AMCG00013987
AMCG00014003 mRNA upstream 3905 49302622 ~ 49310125 (-) True AMCG00014003
AMCG00013998 mRNA upstream 13593 49312310 ~ 49317429 (-) True AMCG00013998
AMCG00013999 mRNA upstream 21454 49320171 ~ 49326142 (-) True AMCG00013999
AMCG00014002 mRNA upstream 28725 49327442 ~ 49330861 (-) True AMCG00014002
AMCG00013997 mRNA upstream 48567 49347284 ~ 49352698 (-) True AMCG00013997
TU60179 other downstream 471971 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 471971 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 471971 48817983 ~ 48821156 (-) True AMCG00013991
TU59777 other downstream 1318212 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 1424264 47864850 ~ 47868863 (-) True AMCG00013946
TU60423 other upstream 185783 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 196010 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 421048 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 429787 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 446229 49744946 ~ 49747551 (-) True G48516

Expression Profile